RNA id: XR_006252397.1


Basic Information

Item Value
RNA id XR_006252397.1
length 1733
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC122356898
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10784852 ~ 10787504 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatttgcattattcTTCAGTCTGATAAATTTTCAAACAATTTTTCACTAGTTAATACTTAAATTCCGTTGATTATTGTCAATTTGACTGCACaaatactatttaaactgaactgagctggacaatgatgtctctgaattcaataataaaaagcctttaaatgaaaactgagtGTTTAGTCTTGTCATTATACACTACTGTCACATATTCTCCTATTCAAtatgttaagtgctttgacacaatctgtattgttaaaagcgctatataaataaaggaaGACTAATTTTTGCAGTTTTCCATTACtggttatttttataaataccaGTCTTACCTGATTATGATAATTCATGTTGcagctttttgtatttttatttcccaGCCATACTCTCCGCATTCGGCATCATTCTATCATAGAAAAGGTTGCACATTCTCCTTAACGCACAGGTGAATTGGGTGCACCGCTTCAATCAAGGCTTTACTATTGGGTTTGAGAGTCATCTGAGCCCAGACAACAAAAGCAAACGCTACAGTGAGTGTCTCTACTGTAAGTGGCTTTTGAAGAATTGGCACAGTCATCTGGCGAACACCTCACATCTCTCACAAACAAATGAAGGCCTGGCGCTTCAAAGTGAGATTGATATCTCTCTCTGAACTTCAACCAGAATATTCTGAATATTGAGAGAGGTGCACTCCTCCCACGGGACCGCCGAGGCGCCTCTCTCCTCCCTCGTTCCGCcaaagagggggaaaaagatTGCCCCTGATCTTCCATGTTCATCAATATTCACTCATTCATCGTGAGCCATGGCAGCTGAAATTTGGCCTAGTATTGCTGAATGGATGACCCAGGGATCCACTTTGTTGCCATGAGGTTGTCTGCGATTGAGATTTAGGGTTAGAACAGAACAATACACAATTTTTATGAACTTCAGACTCATCTATATATTTTACCTTGTGACAGAAAACTTTTCAATTTGCTCTGCAAGTTCTTAAGATTACCCATGCATTTAATAAGCCTAGAATAGATGTATCTACCTTGTTCTGCTTTCTGACTGTATGCCAAATATTAAATTGCGTTTTCCCTTTCTGTTTTTACttggaaatatttttcaaataaaataaaggaagcTGATAAAGACGGTTGCCATAAATCAACGCGTATTGCTGAATTCTCACAGAGTATTTAAGCTACTATACTGAAGTATTGATATTAAACTgaatttgcaaaatatatataaaatgtctttgcAGTTGCAATGTGCACACATAGAATGTAATATGCATTGTGCACCATGAAAACACAAATGATCTTGAAcaaattctgtcttttttatgcaaattcttaaaaaaaaacatattttttttacatttactgtaaaacatcCACCAGGAAAATACGTTTTGATGCGAACAAATGCATTGCCAATCAGGTTTGCTTCTCTGTTAGTATCTCCACAGCTGTATGTCTCTATTAGAGCATCTTTCCGAGAACTCCTTAGCCAAATGAAGAGGCAAACAtagatggtgatgatgatgatgatgatgatgatgatgatggtggtcaTAATATAGATCACTGAACCAAGCTCAACCAGCTTAAGACCGAACCACAAAATTCACAATCATACGAATCCCACCTCCAGGTAAACCACCGAATTTTAAATTCCAGGTAATGTGAAAATGACTACGCTGTCACTGTGCAGTGCACTAATAAATCACCACAGTTGCATACA

Function

GO:      GO:0017137

KEGG:

id description
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137350 lncRNA downstream 157 10784373 ~ 10784695 (-) True G92788
TU137346 lncRNA downstream 9353 10775195 ~ 10775499 (-) True G92784
TU137341 lncRNA downstream 21960 10762619 ~ 10762892 (-) True G92779
TU137183 lncRNA downstream 150286 10632250 ~ 10634566 (-) True c13h10orf53
TU137172 lncRNA downstream 173419 10610570 ~ 10611433 (-) True G92662
XR_006252378.1 lncRNA upstream 82 10787586 ~ 10799864 (-) False LOC122356733
XR_006252376.1 lncRNA upstream 82 10787586 ~ 10799864 (-) False LOC122356733
XR_006252377.1 lncRNA upstream 82 10787586 ~ 10795969 (-) True LOC122356733
TU137407 lncRNA upstream 157700 10945204 ~ 10947731 (-) True G92829
TU137414 lncRNA upstream 189029 10976533 ~ 10977459 (-) True G92836
XM_043256242.1 mRNA downstream 82755 10669026 ~ 10702097 (-) False cdhr1a
XM_043256243.1 mRNA downstream 82755 10670310 ~ 10702097 (-) False cdhr1a
XM_043256245.1 mRNA downstream 105030 10669026 ~ 10679822 (-) True cdhr1a
XM_043254506.1 mRNA downstream 125943 10651830 ~ 10658909 (-) True rgra
XM_043255558.1 mRNA upstream 99300 10886804 ~ 10893952 (-) True hif1an
XM_043255947.1 mRNA upstream 110864 10898368 ~ 10905914 (-) True wnt8b
XM_043255949.1 mRNA upstream 118551 10906055 ~ 10911829 (-) True scdb
XM_043255948.1 mRNA upstream 118551 10906055 ~ 10911827 (-) False scdb
XM_043254603.1 mRNA upstream 125546 10913050 ~ 10914756 (-) True trmt2b
TU136940 other downstream 594342 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 1669301 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 2736951 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 3649710 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 3653637 7131145 ~ 7131215 (-) True trnag-gcc_67
TU137394 other upstream 137440 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 413442 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 738676 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 983924 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 1641693 12429197 ~ 12430778 (-) False tmem234

Expression Profile