RNA id: unassigned_transcript_1924


Basic Information

Item Value
RNA id unassigned_transcript_1924
length 74
RNA type tRNA
GC content 0.58
exon number 2
gene id trnai-uau_4
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4071806 ~ 4071899 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCCAGTGGCGCAATCGGTTAGCGCGCGGTACTTATAATGCCGAGGTtgtgagttcgagcctcacctggagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134192 lncRNA upstream 9027 4057260 ~ 4062779 (+) True G90646
TU134104 lncRNA upstream 22194 3952600 ~ 4049612 (+) False G90573
TU134114 lncRNA upstream 58690 3992508 ~ 4013116 (+) True G90579
TU134102 lncRNA upstream 115893 3952600 ~ 3955913 (+) False G90573
TU134103 lncRNA upstream 118099 3952600 ~ 3953707 (+) True G90573
TU134198 lncRNA downstream 33348 4105247 ~ 4105471 (+) True G90650
XR_006252290.1 lncRNA downstream 65418 4137317 ~ 4142088 (+) False LOC122356176
TU134199 lncRNA downstream 65424 4137323 ~ 4142502 (+) True LOC122356176
XR_006252408.1 lncRNA downstream 172709 4244608 ~ 4245790 (+) True LOC122357002
TU134238 lncRNA downstream 280720 4352619 ~ 4353931 (+) False G90660
XM_043254839.1 mRNA upstream 122851 3881586 ~ 3948955 (+) True LOC122356299
XM_043256022.1 mRNA upstream 239256 3809058 ~ 3832550 (+) True pkdcca
XM_043255416.1 mRNA upstream 312671 3729913 ~ 3759135 (+) True ubr2
XM_043255862.1 mRNA upstream 342338 3717296 ~ 3729468 (+) True si:ch73-193i2.2
XM_043255861.1 mRNA upstream 354512 3713833 ~ 3717294 (+) True LOC122356793
XM_043255728.1 mRNA downstream 253739 4325638 ~ 4348853 (+) True plekhh2
XM_043255864.1 mRNA downstream 288636 4360535 ~ 4362542 (+) True LOC122356796
XM_043255865.1 mRNA downstream 292124 4364023 ~ 4373553 (+) True si:ch73-105b23.6
XM_043256129.1 mRNA downstream 301315 4373214 ~ 4377830 (+) True LOC122356983
XM_043255643.1 mRNA downstream 315282 4387181 ~ 4391197 (+) True calm2a
XR_006252399.1 other upstream 242065 3809053 ~ 3829741 (+) False pkdcca
XR_006252394.1 other upstream 358043 3620406 ~ 3713763 (+) False prkn
TU133843 other upstream 621789 3449401 ~ 3450017 (+) True G90377
TU133812 other upstream 790809 3277837 ~ 3280997 (+) False G90348
TU133811 other upstream 790809 3279202 ~ 3280997 (+) True G90348
TU134239 other downstream 110600 4182499 ~ 4244041 (+) False G90660
TU134245 other downstream 110600 4182499 ~ 4244041 (+) False G90660
TU134242 other downstream 169233 4241132 ~ 4244041 (+) True G90660
TU134595 other downstream 920428 4992327 ~ 4997896 (+) False si:ch73-49p17.1
unassigned_transcript_1926 other downstream 3059527 7131426 ~ 7131496 (+) True trnag-gcc_68