RNA id: TCONS_00009795


Basic Information

Item Value
RNA id TCONS_00009795
length 117
RNA type processed_transcript
GC content 0.47
exon number 2
gene id XLOC_005016
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 48815988 ~ 48837308 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCACACCCACCGCCCTTTTACTTCCTCATTCACTCCAAACTCCCGATCTGCAATCTCACACATCACAacctgaaactcgcctacagcacttattcattgttgctcttatagttgtg

Function

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0032506 cytokinetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030707-5 Predicted to enable calcium ion binding activity. Predicted to be involved in cytokinetic process and phagocytosis. Predicted to be active in cytoplasm. Is expressed in several structures, including cardiovascular system; digestive system; immature eye; integument; and sensory system. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 23. Orthologous to human ANXA11 (annexin A11).

Ensembl:

ensembl_id ENSDART00000152846

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010778 lncRNA upstream 70717 48744259 ~ 48745443 (+) True XLOC_005013
TCONS_00011044 lncRNA upstream 151715 48662791 ~ 48664445 (+) True XLOC_005010
TCONS_00011043 lncRNA upstream 188795 48625696 ~ 48627365 (+) True XLOC_005008
TCONS_00011041 lncRNA upstream 242957 48548094 ~ 48573203 (+) False XLOC_005007
TCONS_00011042 lncRNA upstream 260496 48548104 ~ 48555664 (+) True XLOC_005007
TCONS_00009796 lncRNA downstream 7547 48833049 ~ 48836484 (+) True XLOC_005016
TCONS_00010779 lncRNA downstream 62419 48887921 ~ 48896104 (+) False XLOC_005018
TCONS_00010780 lncRNA downstream 64701 48890203 ~ 48896104 (+) True XLOC_005018
TCONS_00009806 lncRNA downstream 208221 49033723 ~ 49038796 (+) False XLOC_005021
TCONS_00009805 lncRNA downstream 208221 49033723 ~ 49038796 (+) False XLOC_005021
TCONS_00009793 mRNA upstream 5035 48803098 ~ 48811125 (+) True XLOC_005015
TCONS_00009792 mRNA upstream 15429 48784731 ~ 48800731 (+) True XLOC_005014
TCONS_00009791 mRNA upstream 48366 48744016 ~ 48767794 (+) False XLOC_005013
TCONS_00009790 mRNA upstream 118789 48683208 ~ 48697371 (+) True XLOC_005012
TCONS_00009788 mRNA upstream 133409 48674381 ~ 48682751 (+) False XLOC_005011
TCONS_00009797 mRNA downstream 15680 48841182 ~ 48881716 (+) False XLOC_005017
TCONS_00009799 mRNA downstream 15680 48841182 ~ 48887804 (+) False XLOC_005017
TCONS_00009798 mRNA downstream 15680 48841182 ~ 48887804 (+) False XLOC_005017
TCONS_00009800 mRNA downstream 15917 48841419 ~ 48856533 (+) False XLOC_005017
TCONS_00009801 mRNA downstream 25879 48851381 ~ 48881716 (+) False XLOC_005017
TCONS_00009746 other upstream 1878205 46883844 ~ 46937955 (+) False XLOC_004982
TCONS_00009747 other upstream 1878214 46915371 ~ 46937946 (+) True XLOC_004982
TCONS_00009724 other upstream 2212605 46603441 ~ 46603555 (+) True XLOC_004973
TCONS_00009703 other upstream 4189153 44626890 ~ 44627007 (+) True XLOC_004951
TCONS_00009686 other upstream 7355526 41460518 ~ 41460634 (+) True XLOC_004935

Expression Profile

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