RNA id: TU154960


Basic Information

Item Value
RNA id TU154960
length 910
lncRNA type sense_over
GC content 0.52
exon number 3
gene id LOC122358919
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9252508 ~ 9280469 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTCACTGTGACACGTGAGTGTTAATGATGTCAGCCgtgtgtgaggggtgtgtgACGTCTTTTGGTCTTTCTCCAATCAGTAACCGATTCGGAATGCTGGCGTTCCTCTGTGGAATCGGGGCTCACAGGCTCCCCAGAAAGACGCGTACCTCCACCAGGCCCAAACAACACCAACGGTCACTCGTACAGTGGCCAGAACGTGGGCTTTGCAAGCCGGCCTAAGATTCCTCGCACCCCTGACAGTGACGCAGGCAGTGCTGGCAGGTCTCGTCTGCCCCCGCTGGCCCCCCAGTTCTCCAACAGCGAGCCCCAGCAGAGCGGAAGCAGACCCGGCTCGTCGGGGGGCTCCGGCGGGCGGCCCAGCCAACAGAGCAGCCAATCGCatagaaagtgaaaaaaaaagaagctttcaGCAAGAGAAGCCTATCGCCAGAGGAGTATCCAACTTCCTGTAACAGCATCCAAGTTTCTTATCGCGGTCAAGCCAACGGAGACGGTCGTGGGCCTGCGGAACAAAGCTGAGGATTGTGGTTTCGGAGGGCCTTTCAGCCCCTGCCACAGAGCTCCTCTGTAACACAACACACTTGGGCAATAATAACAACAAGTACTTTCATTATCCCACAACCTTCCAAACGCCTGGCGCTCCGCTCCTGCTTTGTTACTCTTGAACCTCGACCACCCTCGCTGAGAGGAAGCGGATAGATGTAAAAACATTGAGCGAAAACACCGTCTGAATTTCCGTCGTTTGACGCCGTTTTATTGTTGCAGTTGCTTTTGTCTACGTTTTAGTTGCAAAACGTCATATAGCGCTGTTTTTGCATGAGTGTGCTGTGTGAAATAAATCTGGTAGACAAAAcgaatacagtaaaaatttagCTAATCGATTGATGTTTGGGCCTGTTGTTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154950 lncRNA upstream 23151 9249947 ~ 9250408 (+) True G104937
TU154926 lncRNA upstream 43372 9229959 ~ 9230187 (+) True G104925
TU154835 lncRNA upstream 353395 8917987 ~ 8920164 (+) True G104875
TU154376 lncRNA upstream 393140 8862178 ~ 8880419 (+) True G104524
TU154356 lncRNA upstream 510107 8702073 ~ 8763452 (+) True G104508
TU155004 lncRNA downstream 110988 9391457 ~ 9391853 (+) True G104973
TU155005 lncRNA downstream 111672 9392141 ~ 9392569 (+) True G104974
TU155043 lncRNA downstream 240250 9520719 ~ 9521110 (+) False camkk1b
TU155049 lncRNA downstream 261897 9542366 ~ 9543202 (+) True G105002
TU155068 lncRNA downstream 389165 9669634 ~ 9673345 (+) False G105011
XM_043258214.1 mRNA upstream 270297 8995892 ~ 9003262 (+) True sars2
XM_043258581.1 mRNA upstream 292667 8975037 ~ 8980892 (+) True fbxo46
XM_043259138.1 mRNA upstream 355872 8908510 ~ 8917687 (+) True si:ch211-11n16.2
XM_043259876.1 mRNA upstream 433643 8830993 ~ 8839916 (+) True LOC122359549
XM_043259798.1 mRNA upstream 456633 8788958 ~ 8816926 (+) False LOC122359480
XM_043258902.1 mRNA downstream 7535 9288004 ~ 9291404 (+) True b3gnt7
XM_043259317.1 mRNA downstream 134482 9414951 ~ 9426410 (+) False LOC122359130
XM_043259314.1 mRNA downstream 138428 9418897 ~ 9426410 (+) False LOC122359130
XM_043259316.1 mRNA downstream 138463 9418932 ~ 9426410 (+) False LOC122359130
XM_043259315.1 mRNA downstream 141080 9421549 ~ 9426410 (+) True LOC122359130
TU154361 other upstream 516452 8756327 ~ 8757107 (+) False LOC122358603
TU154357 other upstream 524983 8747855 ~ 8748576 (+) False LOC122358602
TU154346 other upstream 640137 8632341 ~ 8633422 (+) False LOC122358505
TU154273 other upstream 856095 8401311 ~ 8417464 (+) True G104466
TU155045 other downstream 241198 9521667 ~ 9523608 (+) False camkk1b
XR_006252679.1 other downstream 269283 9549752 ~ 9552128 (+) True dhrs11b.1
unassigned_transcript_2148 other downstream 294040 9574509 ~ 9574582 (+) True trnat-agu_66
unassigned_transcript_2149 other downstream 294386 9574855 ~ 9574943 (+) True trnar-ucu_52
XR_006252680.1 other downstream 308320 9588789 ~ 9623972 (+) False traf4a

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000015_02452032_02454972.mRNA True 857 mRNA 0.46 3 CI01000015 2451584 ~ 2455093 (+)