RNA id: TU155277


Basic Information

Item Value
RNA id TU155277
length 2000
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G105141
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9793748 ~ 9795843 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACACAGTTTAATGAATCTGACAGGCCGATTTGTCACAGGCGGTACCTGAGTGGGCATGTGCTATGTGCAAACTATACAGTCATGTGATTGTGCACGGATCAGAACTGTAAAATTAAGgcgaaaaaaaaagacacatgcaAATTAATTCTACGCATCTGGAACAGCAGACAGGAAGACGGCAAAGACGGTTGCTGTGCGATCAAACCTTAATTACTTACATTCAGAAACCTGTTTCGCACATTACGTAGATGACTAGCTTGATGGAGTTAGTATGTCGTGATACGAGTTACAGAtggtgtttttgctttttatttatttattttttttaacatgtgcACTTCAATTACATCTAGTCTGTTGTATATTCAGacagacattttaaatagtCAATATGGGTCTTCCCGAAACGCAGTACCTCTCaagcaaatgaaaagaaaatataaatttactGCAGAGGTATTCAGACACAAACATTCTTTCTATAACAACAGAACGCTTTAAATCAAACCGTACAACCAAATGTGCTTCTATCCGTCCCCCAAATACCCCAAAAATGACATACAGCGCGTGGCATTCAATGTATTACAGCACTAAGTCACCAAAAATATATCCATTTATAGCAGACATGTGTGCTGATCAATGCTTCACCGTTTTCTGACTtactttattatacatttttttttgttccgtTTAAGTTTTTAACAACATGTGCGCTAGGAAAAACCTGCAAGGACCATTAACAAAAACTCGGGCCTCTAATGAAAAGCAATTTAACCGCAACATGTACACAAGTAGTATGGGACATGATCCATGCAGTTGTGCACCGCCAGCATAGTCATGGTATGGTCTTGTTTAATAGTCGTAGATGACGTCAGCCACCAGTGCATCACAGTCTTCATTGGAGATACATTCGACGGTCTGGTTCGGCCCGGCCCGGACTCAGCCAGACTTGAAGAGGAGTATGGCCACCTGGCCCAAGTAGAAGTAGATGAAGTGTTTCGTCTCGTGGGTCACGTAGCTGCCGAAGTTCcgtcccacaatgcaatgccaCGTCGGATTGTATTTCTTATCGAACTCCTTTGATGTACGCGGCAATGTCCTTTTCGATGTTGTATTTCTCCATGGCCTGCGTAGCGCAGTCCACTGCATCCTGCTGCATGTCTTCGGACATGTCAGCGTTCTTGATCACAGCCTTCCTGTCGGTCATGGTTCCTGAAAACGTAGAAACGAAATAAGATCGGTCTCCGCTGAGAGTCAAGACAGTGGGGCCATTCATGGGCGCTTCTTCTAGGACAATGCCGGGCGAATTCCTGACAGAATGCCATCAACGGAGAGCATCTGATTTGTTAAGGCACTAGATACTTTACATGAGAACCAAGCAGGTCTTTCAGTCCAGCACTAGCATTTGAAGCTAGTCAATAAAAAGGCCGTATTTGCATACCGTTAATGCTGGACTCAGAAAACCAACTCTGTTCTCGAGTGACACTTTAGAgagaaatacagtataaaagtaCTTCATTTATCCCAGTATTGGTATGGCTAGTTAACTATAGTGCAAATGCACAGAAAGCACATTTGCAGTCGTTCAATAAAGGCCATATGCGCATATAGGCTCAGAGAACCTTATTAAATGGCGGTCAGACTCATTTTTGTTGGAGTGAAATTCAGTATACTTAACTAGCAATATTCATACTGGGATATATATGGATTAAATGCATATCCAAAAGACAACATTATCCTTAAAAACTAGGGAATAAAGGCCGTATTACTGCTAGGCCCATGAAAGAGTGTCAAACTGTgcttgaaatatattatatgtatttatttatatttattccctctcatttaattaatttttttttacttctccAAAAgctaaatacagtataaaaagcCCTTTAGGTAACCATGAACACCAATACTGGGATACATATGGTCCAATGCATAGACAGCCCTATAATTCAGATCATTATTTGCATGATATTAAACCAAGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155240 lncRNA upstream 55124 9734203 ~ 9738624 (+) True G105112
TU155231 lncRNA upstream 87218 9706208 ~ 9706530 (+) True G105106
TU155228 lncRNA upstream 90099 9703426 ~ 9703649 (+) False dusp14
TU155226 lncRNA upstream 95339 9698074 ~ 9698409 (+) True G105101
TU155068 lncRNA upstream 120403 9669634 ~ 9673345 (+) False G105011
TU155282 lncRNA downstream 18148 9813991 ~ 9815390 (+) True G105145
TU155313 lncRNA downstream 47993 9843836 ~ 9844052 (+) True G105168
TU155317 lncRNA downstream 50992 9846835 ~ 9907918 (+) True G105171
TU155382 lncRNA downstream 333708 10129551 ~ 10131865 (+) True G105225
TU155355 lncRNA downstream 354119 10149962 ~ 10169712 (+) True G105199
XM_043259030.1 mRNA upstream 78059 9703500 ~ 9715689 (+) False dusp14
XM_043259029.1 mRNA upstream 78059 9707889 ~ 9715689 (+) True dusp14
XM_043259026.1 mRNA upstream 97204 9679771 ~ 9696544 (+) False tada2a
XM_043259174.1 mRNA downstream 48562 9844405 ~ 9847385 (+) True mrm3a
XM_043259529.1 mRNA downstream 115813 9911656 ~ 9917112 (+) True p2rx8
XM_043259528.1 mRNA downstream 131425 9927268 ~ 9935456 (+) True flot2b
XM_043259654.1 mRNA downstream 153550 9949393 ~ 9965676 (+) True galnt17
XM_043259758.1 mRNA downstream 290834 10086677 ~ 10092950 (+) False gdpd1
TU155072 other upstream 120403 9669634 ~ 9673345 (+) True G105011
XR_006252680.1 other upstream 169776 9588789 ~ 9623972 (+) False traf4a
unassigned_transcript_2149 other upstream 218805 9574855 ~ 9574943 (+) True trnar-ucu_52
unassigned_transcript_2148 other upstream 219166 9574509 ~ 9574582 (+) True trnat-agu_66
XR_006252679.1 other upstream 241620 9549752 ~ 9552128 (+) True dhrs11b.1
TU155356 other downstream 297812 10093655 ~ 10110441 (+) False ypel2b
TU155413 other downstream 408996 10204839 ~ 10207452 (+) True G105248
XR_006252665.1 other downstream 557318 10353161 ~ 10390600 (+) False snx19b
TU155825 other downstream 926129 10721972 ~ 10728395 (+) True G105513
TU156035 other downstream 1574793 11370636 ~ 11371927 (+) False LOC122358628

Expression Profile