RNA id: TU155355


Basic Information

Item Value
RNA id TU155355
length 798
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G105199
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10149962 ~ 10169712 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttttttattgatttgctatttatttattatatattaactcTACAATGAATAATAAAGGGCAATGTACAAAGAATAATCGTTAGAATAAAGGTATTCACACTGAGCTTTCAGAAATGAGAGAAAACCACAGACTTATAAAAACCAGTCTGGTCTAAATGAACACTTTCCTCAAAATGTAGGCTACAATAGttcagtttaaaattaaattcaaaatacagtcaaaatCAGAACAATCTCAATACATTTGAAGCATCGGACAAAACGTGAGGAAAAGAGTAGCAAGGTTTAGAGAAGACATAATCGTAGCTTTacctgaaatgaaaaaaagcggggaaaaaaaataacaagaaagaTCAAAACTGTAAGAAGCAGTCATTTCTTCCTTCACAGTCAAGATATGTTTCCATTAACTTGTAAAGTAAGAATTACACCATTTGTCTACAACTTACCTAATGCAGACTGTATTTGCTGAGTTTCTGTTTCTCTGGGTAACACGGGTtctacaaCTATAACGGTGACCTTTATTGTGCTGAGAGCCAACCCCTCTGAGTCAAGGACTTTGTATGTTCCGACGCTGCGGGCCGTAACATTACTGAGAATCAACTCGTTTCCTCTCTTTATCAGATGaccttttttgtgtttgactGCATGTTTTTGCCACAGGACGGTCCAGTCGGTGTCATTGCTTTTTTGAAAAATCACTTGCTCAGCTTGATGTGTGTGCAGATCCAGGATCAGTTCTTCCCCCGTCCGCACTGATTTGATGTCCTTGTGATCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155382 lncRNA upstream 18097 10129551 ~ 10131865 (+) True G105225
TU155317 lncRNA upstream 242044 9846835 ~ 9907918 (+) True G105171
TU155313 lncRNA upstream 305910 9843836 ~ 9844052 (+) True G105168
TU155282 lncRNA upstream 334572 9813991 ~ 9815390 (+) True G105145
TU155237 lncRNA upstream 346845 9763871 ~ 9803117 (+) True G105109
TU155401 lncRNA downstream 2150 10171862 ~ 10174746 (+) False LOC122358545
TU155402 lncRNA downstream 2150 10171862 ~ 10177012 (+) True LOC122358545
TU155403 lncRNA downstream 2150 10171862 ~ 10174921 (+) False LOC122358545
XR_006252623.1 lncRNA downstream 3245 10172957 ~ 10177828 (+) False LOC122358545
TU155404 lncRNA downstream 3595 10173307 ~ 10175622 (+) True G105240
XM_043259759.1 mRNA upstream 39519 10093455 ~ 10110443 (+) True ypel2b
XM_043259758.1 mRNA upstream 57012 10086677 ~ 10092950 (+) False gdpd1
XM_043259757.1 mRNA upstream 57012 10086681 ~ 10092950 (+) True gdpd1
XM_043259654.1 mRNA upstream 184286 9949393 ~ 9965676 (+) True galnt17
XM_043259528.1 mRNA upstream 214506 9927268 ~ 9935456 (+) True flot2b
XM_043258990.1 mRNA downstream 9554 10179266 ~ 10187171 (+) True clptm1
XM_043258146.1 mRNA downstream 20875 10190587 ~ 10199278 (+) True relb
XM_043258145.1 mRNA downstream 20876 10190588 ~ 10199278 (+) False relb
XM_043258379.1 mRNA downstream 68465 10238177 ~ 10241248 (+) True LOC122358538
XM_043258185.1 mRNA downstream 117243 10286955 ~ 10299275 (+) True dhx40
TU155356 other upstream 39521 10093655 ~ 10110441 (+) False ypel2b
TU155072 other upstream 476617 9669634 ~ 9673345 (+) True G105011
XR_006252680.1 other upstream 525990 9588789 ~ 9623972 (+) False traf4a
unassigned_transcript_2149 other upstream 575019 9574855 ~ 9574943 (+) True trnar-ucu_52
unassigned_transcript_2148 other upstream 575380 9574509 ~ 9574582 (+) True trnat-agu_66
TU155413 other downstream 35127 10204839 ~ 10207452 (+) True G105248
XR_006252665.1 other downstream 183449 10353161 ~ 10390600 (+) False snx19b
TU155825 other downstream 552260 10721972 ~ 10728395 (+) True G105513
TU156035 other downstream 1200924 11370636 ~ 11371927 (+) False LOC122358628
unassigned_transcript_2151 other downstream 1650849 11820561 ~ 11820632 (+) True trnap-cgg_29

Expression Profile