RNA id: TU155401


Basic Information

Item Value
RNA id TU155401
length 1094
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC122358545
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10171862 ~ 10177828 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTTCTCCTATCAATACTAGCACCGCGCTGTTAAACAGAGAAAGCTTTGTCACTGAACGGGCATTATAAAGGGTTTCCGtggtaccatttttttttttatacttaattaGGCTGACAAAGAAGCCATGTTATGCAATAAATGTCAATCAAACGCATCACTGATGTCAGTGTGATCTCAACATGACACCAGTTTGACGTCTAAACTATGACATCCATCTGATGCGAGCTTAATGTCTAATGTCCTCACCTTTTTACAAATTTGAACTGAGCTCTTTGGCTGTGATTAGAGTAAGAAATGAATCGCAGAGCTCTCCGGCCGCAATTCAGTTGCAGAGCCatgcaatgaaaaacaaaccagtAAAACGCGGTTGTGACGCTGGGTGCATTTAAAGCAACCGCGGCGTGCCTCGTGAGGACGGGTTTCAGACTCCCGGAGCTGCGGCGCCGCCGAGACCCAACAGCGTGCGGCGAAGCGAAACTTAAACTCGGCAGACCCGTCCGACTCTAGACTACACCAACAAGACCTGAATATACTTGAAAGCGGCGCGTTAGCGTGGATATCTGGAGGACGAGAAGCGAATGCATTGCTATTTTCGTGATTGTTTATCTACGAACCTCATAGATATTGTATCGACCAACCCGTTTTATTCCTAAAAGAAGGCAACACAGGAATATCACCTGTAGCTTTCTACTGCGTCTCTGTTAAAAACCTTTCTTACCGGTTACACCCGCCCATATCGCAGTAGCTTCAGCTCCGACCGCTTCGGGGATGTTGATCGGGTTAAAGAGATCGGCTGTGAATATATAGCCGACCCGTCTCTGTTTCTCAAAAACGAAACTTAACTTCGGGCGGAAGAAACCGCTCGCATTGCAGTTGCTTCGGAATATTTCTAAACTTTAGTCAGTCAAAATTAGTTTCTGAGCTATTTTTTGTTTCTAGAATAGGCTGGTGTTGTGACATTGAAGGTACGATTGTCATGTTTGTTATGTTGACTTTAGTCTAAAGTTTAGAAATATTCCGAAGCAGAAATGTTCGATGCGAGCGGGTTCTTCTGCCCGAAGTCAAGTTTCGTTCACTATATATTCACAGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155355 lncRNA upstream 2150 10149962 ~ 10169712 (+) True G105199
TU155382 lncRNA upstream 39997 10129551 ~ 10131865 (+) True G105225
TU155317 lncRNA upstream 263944 9846835 ~ 9907918 (+) True G105171
TU155313 lncRNA upstream 327810 9843836 ~ 9844052 (+) True G105168
TU155282 lncRNA upstream 356472 9813991 ~ 9815390 (+) True G105145
TU155405 lncRNA downstream 2579 10177325 ~ 10177808 (+) False LOC122358545
TU155406 lncRNA downstream 3126 10177872 ~ 10178226 (+) True G105242
TU155630 lncRNA downstream 162020 10336766 ~ 10337446 (+) True G105395
TU155631 lncRNA downstream 162020 10336766 ~ 10337398 (+) False G105395
TU155632 lncRNA downstream 162020 10336766 ~ 10337333 (+) False G105395
XM_043259759.1 mRNA upstream 61419 10093455 ~ 10110443 (+) True ypel2b
XM_043259758.1 mRNA upstream 78912 10086677 ~ 10092950 (+) False gdpd1
XM_043259757.1 mRNA upstream 78912 10086681 ~ 10092950 (+) True gdpd1
XM_043259654.1 mRNA upstream 206186 9949393 ~ 9965676 (+) True galnt17
XM_043259528.1 mRNA upstream 236406 9927268 ~ 9935456 (+) True flot2b
XM_043258990.1 mRNA downstream 4520 10179266 ~ 10187171 (+) True clptm1
XM_043258146.1 mRNA downstream 15841 10190587 ~ 10199278 (+) True relb
XM_043258145.1 mRNA downstream 15842 10190588 ~ 10199278 (+) False relb
XM_043258379.1 mRNA downstream 63431 10238177 ~ 10241248 (+) True LOC122358538
XM_043258185.1 mRNA downstream 112209 10286955 ~ 10299275 (+) True dhx40
TU155356 other upstream 61421 10093655 ~ 10110441 (+) False ypel2b
TU155072 other upstream 498517 9669634 ~ 9673345 (+) True G105011
XR_006252680.1 other upstream 547890 9588789 ~ 9623972 (+) False traf4a
unassigned_transcript_2149 other upstream 596919 9574855 ~ 9574943 (+) True trnar-ucu_52
unassigned_transcript_2148 other upstream 597280 9574509 ~ 9574582 (+) True trnat-agu_66
TU155413 other downstream 30093 10204839 ~ 10207452 (+) True G105248
XR_006252665.1 other downstream 178415 10353161 ~ 10390600 (+) False snx19b
TU155825 other downstream 547226 10721972 ~ 10728395 (+) True G105513
TU156035 other downstream 1195890 11370636 ~ 11371927 (+) False LOC122358628
unassigned_transcript_2151 other downstream 1645815 11820561 ~ 11820632 (+) True trnap-cgg_29

Expression Profile