RNA id: TU156192


Basic Information

Item Value
RNA id TU156192
length 1519
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G105736
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11753527 ~ 11755519 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTAGAGCTTTCAATCGCGCCTGCTCCTCCTCCAGAGCTGCCTGCTTTTCCCTTTCATCCACTTTGGTGAAAGACATGCCAGTGTTGGCCAGAGATGACACAGCATTGGAGAGTGTGCTTGCCTGCTGGCGGCAGTGGAGTCCTTCACCTTCTTTCCTTCTAATGAAGCCAAGTGTTGCTCCAGGGCATCCAAAAGACTGCTGGGGGCCTGGGGGAACGCACaaacatttactcatttacagCACCGTCTTCATCAAGCCACCAGTGAAAAGAGAGTAAATAGCTAATTGGCAATAAGAATTAAACGGTGCAGAGAAGTGCAGAAAAGAGTTAGAAAAGTACTTACACACACGGTAAACTGAAGGTGGACAGAAGGTGGAAAGATAAAGGGAAATACAGAATATAAAGGTGGTCTTGGTCAgacaaataatgcattaatttttttttaagtctgctCTTATATAAGGCTATAATGGCATTTGCATTGGATAATAATCTGCCCTTTTCATGTGTCCATGTTTGACATTTTGCCATTATGACAACTGTTCTCACTCCCAAGGTGTCAAATACTGCTGCTTGGGTAAAAGCCCTGCATGTCACTGTATAGAATAATGcatcaacattattattattataattatgaacCCATACTCTCAGGAATATGCTAATCATCTGAAATATATGTACTTGCACTCTATATAAAGGTTGCTCGTACCTTTGAACAAATAATATACACTGACTGCCAAATATTTGTGATTACtgttttttaatgactttataGAGACTAAATTTAGAGCAATCTCTAAACTAGGAAATATATTAGAGTAGAGCATAAGCAGAAAAATATAGATATAGTCACTATGAAATCATGTTAAGTATTATATAGcctgaagattttttttaaagaaaataatgcttttatttggcTAGAATGCagtaaattgatcaaaagtgaaggtaaaggcatttataatgttacaaattattcaaagaatactgaaaaaaataaatcacaccttacaaaaatgtatgataataaatgtttcattgtgaACATAGGGACTtttatcaaaaaacatttaaaggtcTTACTTCGaatctttaatatatattttatttaaattaaatttacacaTGACACAAAATGCCTCCAACAGCTGTATCTGAGTGAGAACTTGTTGCATATTATGTCAATATACTACGTCATAACTGTGGAAGTCACGATTCTTTTATCTCTATcggtgtaattattattttgaaatctcCACTGAGCCCATAACACCTTTATTTGCTgtagaaaagagagaaaagctgAGAAATCTTTAGTGACATGCGCATCCTAACGACCTGCATGCATCTTTTAAGTCAGATTTGTGCAAAGTAAGGCAACAGAGAAAGCAAAACGGTTTCAGAAAATACAGAGGACCGTTAATAATGCAGAACGAGTGCAGGTGTCAAAGTCAGAATAAAAGTGTGGTCCTACCTGAGACAGGTCTGGGATGTCCCCGCGGTCTATTC

Function

GO: NA

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156177 lncRNA upstream 24377 11726547 ~ 11729150 (+) True G105730
TU156043 lncRNA upstream 197229 11555878 ~ 11556298 (+) True G105650
XR_006252604.1 lncRNA upstream 275988 11474428 ~ 11477539 (+) True LOC122358459
TU156019 lncRNA upstream 414594 11338265 ~ 11338933 (+) True G105628
TU156014 lncRNA upstream 422227 11330420 ~ 11331300 (+) True G105623
TU156198 lncRNA downstream 6876 11762395 ~ 11762689 (+) True G105739
TU156322 lncRNA downstream 145832 11901351 ~ 11903829 (+) True G105819
TU156363 lncRNA downstream 272076 12027595 ~ 12030475 (+) False LOC122358755
TU156376 lncRNA downstream 314780 12070299 ~ 12070863 (+) True G105860
TU156393 lncRNA downstream 336335 12091854 ~ 12093153 (+) True G105870
XM_043258945.1 mRNA upstream 27661 11718927 ~ 11725866 (+) True si:dkey-4p15.5
XM_043258946.1 mRNA upstream 27661 11718927 ~ 11725866 (+) False si:dkey-4p15.5
XM_043259707.1 mRNA upstream 39532 11711505 ~ 11713995 (+) True lim2.3
XM_043259563.1 mRNA upstream 48564 11655859 ~ 11704963 (+) False zgc:77784
XM_043259785.1 mRNA downstream 11144 11766663 ~ 11772646 (+) True zpld1b
XM_043258378.1 mRNA downstream 20351 11775870 ~ 11779693 (+) True si:ch211-229d2.5
XM_043259718.1 mRNA downstream 34422 11789941 ~ 11806948 (+) False alcamb
XM_043259717.1 mRNA downstream 34423 11789942 ~ 11806948 (+) True alcamb
XM_043258874.1 mRNA downstream 52688 11808207 ~ 11820288 (+) True dyrk1ab
TU156035 other upstream 381600 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 1025132 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1362927 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 1546075 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 1643086 10093655 ~ 10110441 (+) False ypel2b
unassigned_transcript_2151 other downstream 65042 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 1086658 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 1086658 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 1086658 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 2161054 13916573 ~ 13917262 (+) True G106376

Expression Profile