RNA id: TU156420


Basic Information

Item Value
RNA id TU156420
length 458
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G105890
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12251889 ~ 12252728 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGTGATCAAAGTCTTCCATGTTTCCCCGCGGCCGGACCGTGACCCTGTTCACTTCGTTGTGCAGTCCGTCTAGCAGGAAACGTAGAAACTCCTGAGCATCCTGTTGATGTAGCCCACAAATCTGGGGGCGTATCTCTGAATCTGTGTTTTGAACTCAGAGGGACTGACGGCTTCACTGCTTGAAGAAGTCCACATTGTCTGGATAAGCTTGGCAAACTCTGAAGTCACGACAAAGAGAGGCTTTCAGTAAAGTTAGTGAGCGCTGTGAGAGCTGCAGGAGTTGTGTGGCGTGCCGAGCGCACTCACCTTCCATGAGAGCAGTGTTTGTGCGGCTGTTGTTGTTGAGGTCTCGGCGGTGGGAGTTGTGAAGACAGTAGTCTCGCAGGCTCTGTGTGTTGCTTAGACACTGGAGGATGGAGTTCATAAAACACTAGCgagggaaagaaagagataaaAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156408 lncRNA upstream 2898 12206408 ~ 12248991 (+) True G105880
TU156397 lncRNA upstream 154243 12096904 ~ 12097646 (+) False tnfaip1
TU156396 lncRNA upstream 154392 12096904 ~ 12097497 (+) False tnfaip1
TU156398 lncRNA upstream 154432 12096904 ~ 12097457 (+) False tnfaip1
TU156393 lncRNA upstream 158736 12091854 ~ 12093153 (+) True G105870
TU156437 lncRNA downstream 16903 12269631 ~ 12270174 (+) True G105901
TU156435 lncRNA downstream 17688 12270416 ~ 12274350 (+) True G105900
TU156436 lncRNA downstream 17688 12270416 ~ 12274040 (+) False G105900
TU156432 lncRNA downstream 17872 12270600 ~ 12274040 (+) False G105900
TU156434 lncRNA downstream 17872 12270600 ~ 12274250 (+) False G105900
XM_043259389.1 mRNA upstream 8656 12215249 ~ 12243233 (+) False ulk2
XM_043259390.1 mRNA upstream 8656 12215249 ~ 12243233 (+) False ulk2
XM_043259388.1 mRNA upstream 8656 12215250 ~ 12243233 (+) True ulk2
XM_043258597.1 mRNA upstream 107698 12098635 ~ 12144191 (+) False sgsm2
XM_043259405.1 mRNA downstream 138406 12391134 ~ 12397148 (+) True usf1
XM_043259407.1 mRNA downstream 138406 12391134 ~ 12397148 (+) False usf1
XM_043259406.1 mRNA downstream 138406 12391134 ~ 12397148 (+) False usf1
XM_043259409.1 mRNA downstream 138407 12391135 ~ 12397148 (+) False usf1
XM_043259408.1 mRNA downstream 138408 12391136 ~ 12397148 (+) False usf1
unassigned_transcript_2151 other upstream 431257 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 879962 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 1523494 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1861289 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 2044437 10204839 ~ 10207452 (+) True G105248
TU156910 other downstream 589449 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 589449 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 589449 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 1663845 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2663777 14916505 ~ 14916883 (+) False tbx4

Expression Profile