RNA id: TU156436


Basic Information

Item Value
RNA id TU156436
length 3278
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G105900
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12270416 ~ 12274350 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTggatctaaaaacaaaaatcacattaaacattttgtaaacgtaatgttgttaactaaatCCATTAACGGATTTAGTTAATTCGACAACAACACcaacatcaataaataatatgatacAGAAAATACTATATTAACACTGTATTGACAGTCATTAAAAGACAAGTTTATTTTTCCTTAGCCTTTGACCCACTCCATTCAACTTTCAAACATAGATACAATATTGTGCACATATGCTGGCAAACCAATGGTATAAAACAGtcaaatctgattttaaaattgtaacacGTTTAACGGTGTGACTGTGTGCAACTGAACTTGAAGTATGTAAGTGTTCATTACAATAACAGGCCTAATGCATCCATTAGATAAATGACTCTCTGGAATTCTCATCCCTTTGACGCTCAATAGCCTTTCACACACCCTTTACAAATTAACTTTAACCGAAGATTAAGAACTGCAAATGCACAACAGATAATGCAATCTGAGAAACAATCCAACACATAacatccttcaaaaaaaaaaaaaaaaaaaaaaaaaacggcaaaacaaatacaaaaagcaCAGTTTGGATATAAGTCACAATGATTGAAAAATGTGTGCGAAATAAATCTCACATGGTAAACATAGCGGTATATCTTCACACTTCATATGCGCCGGTCACAGTTTAAGTGGCATTACCTTCAAGGTCGTAAAACtggaatattaataatgcatacatatagaaaaaacataaaataattatgtaaaagcGAAACCCTAATATCAATAGCATGTCCTGTGTGGGCACAGAACATCAAATATTGATACTCTAAAAGGGAAatctctgaagaaaaaaaaaaaaaaagacttcattCTGCTTTAATGTTTGATTAGGGGTCGCAGATAAAGGCAGAAAGAGGGTTAAAGGCATAGAGGATGCTAAAACCTTCATACGTAATCTTTAACAGCTTTCTTTCTCCGACCAAACAGCAACCTTTAAATATGCTATGTGAGCTGATTTTAACGTTTTAAGTTCCACTTCAGTTTAAGTTATACTCATATAAGTCACTATTAAATCTCTATCTACTCGTTTCATTTCATTAAGATTCCAAATTcagaattacaatttaattcacGTCTTACTAACGAAAAACCCTGAAATGTTTAATGAGAAACGCTTCTACCATTTTCAAGTCTTTTGATACACTTTTATATATCAGTACATAAGAGAAGAGCTAATCTACTACTAACCTAAGCATTTGCGAGCGTCAGCGTAACGTGGCACACTGACAGCGATGCGCTTTTCCATTCAGTCCATCCTTCAAGTCATGCTATCATacacgaaataaaaaaataaaaatacagcaaactaGGTTTTCAGGTTTCAGTCGCTAAACATGTTTCGTTTTTTCTTTTCGAATCAAGTATGACAAGCAAATGAGGTTCATGCACTGATTTGATTGATGCACcaggtataaataaataaattgctggTTTTATCCTGTAGCTTCTGTACAATGAACTTGCCACTTTCTGCACTGCACGGAAACAGTCTTGCATTGCGCATTACAACACACATTTCAGACAAACCGGATGCGTAAAAAAAACCCCTAGAAATGAAAAcgttgtcatcatttacttacattccaaatctgtatgtttttctttcttctgtgggacACAAAAGGTGTTCTGAAGGATACAAGAACAGTTTTTGttaccactgacttccatttttggcatggaaaaaaaatactctgaaaaagcattttttttatgccccctagaaaaaaataaaaagtcatacaggtttggttCAACGTAAGTAAATTATAAACTAACGGTTTTGGAGAAACGTAacattatatcacttgctcaccgatggatcctcTGTGATTTATGTAATGctaaatctgttccaatgaagaagCTCATCTatatctcggatggcctgagggtgagtacattttaatcaaattctcCTTTTTGGGTATTCTTTAACTTAAGAAGACCAATTTCCCACTGATGTTCCGCTGAACGTAGAGTCGTACACATTGACTGGTTTGCtactgatttgttttgtttaatttttaacaaataacacCAATCagtaaatcaataataaatactgtgaaTAATCATCATATGTAATACTTCTTTGGTGGACTGATGTTTTGTCACTTAAAAGATCTTATTATTctgcatgtaaaatataaactcatTCAATAACATGGATACAGGTGAAATGAAGATGAGCACTTTTCTCAGCATATGCTTTGTATTGGAGGTACAAGTTTGAGCACCCCCTTCCAAAGTGGCGGAgaaagcactaataaaaatattcaaaaaaggatttaaaaaaacaacatcaacaacaaaaaaacacattaaatagcGAATTTATGTGACACCGCACGTCCCTTCTGGATTCTTTAATCAgattaaaaaactaaactggacatttaaaaacatttgtaaataagATGTTTTGCAAATCTTTCCTTGTGTGAATCTAGCACTGCCCATACAATATATAAGGCCTGAGAGTCTTTTGCTGACAGCATACGACACACATCAGCAGGCAATGGATATCCAAGATTTCTTCTTTAAGACATCAGTGCAGTGCAACATTTTCTTTCAGCTATGGGTGATTGTCTTCAAATCTGAAAAAAGCACATCCCGGGCTGCCAGAGCCTTCCtctgtgctttatttttgaagaaacaGGCGTTTGAAAATACAGGGGTGCTCGTGAAGTCTGAGGACAAAAGGAAACCTTTAATAACGGCAACAAAACCAAAGGTGCGCACGAGTCATGGTGTTTCTTATGACCGTGTAGCGAAGTGGCACATCATGTGCCGAACTAAAGCCCCAGCAAATCCTAGAAGTTTTTCCCTGAAAGACAGTCCCATTCACTCTGTGGAGCTAGTTCAAAGTGGATttggttatttaaatatagctttttAGTGATCCTGGTGGAAAGATGGTTATTTTGTTTTGGGAACTACCAGGATCTCATCCCCATCTTGAATGCTGTAAGAGTGCAAGGCCCTGGCGCTGTATTTCAGCTCATCGGGGCCAAAGGCAGAACCCTTGTCGATGTAGTAAAGGCGCATGTTGCTGGTGGGGAGCTGCACAACAGTCCTCAGCTGCTTCTTCAGCTCTGCGACGGTCTGGTCCAAGCGGATGCTCACCTGCTCCACTTTGTCTTCATAGCGTACCTCCACTTTGGCGTGGCAACGCGGTCTCAGGTCGATCTCAGCCAGAGGAGCCAGTTTCCCATATTTGGTCACCAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156437 lncRNA upstream 242 12269631 ~ 12270174 (+) True G105901
TU156420 lncRNA upstream 17688 12251889 ~ 12252728 (+) True G105890
TU156408 lncRNA upstream 21425 12206408 ~ 12248991 (+) True G105880
TU156397 lncRNA upstream 172770 12096904 ~ 12097646 (+) False tnfaip1
TU156438 lncRNA downstream 612 12274652 ~ 12275410 (+) True G105902
TU156439 lncRNA downstream 1773 12275813 ~ 12276056 (+) True G105903
TU156440 lncRNA downstream 2169 12276209 ~ 12276804 (+) True G105904
TU156441 lncRNA downstream 3033 12277073 ~ 12277456 (+) True G105905
TU156452 lncRNA downstream 9868 12283908 ~ 12341892 (+) True G105909
XM_043259389.1 mRNA upstream 27183 12215249 ~ 12243233 (+) False ulk2
XM_043259390.1 mRNA upstream 27183 12215249 ~ 12243233 (+) False ulk2
XM_043259388.1 mRNA upstream 27183 12215250 ~ 12243233 (+) True ulk2
XM_043258600.1 mRNA upstream 126225 12098636 ~ 12144191 (+) False sgsm2
XM_043259405.1 mRNA downstream 117094 12391134 ~ 12397148 (+) True usf1
XM_043259407.1 mRNA downstream 117094 12391134 ~ 12397148 (+) False usf1
XM_043259406.1 mRNA downstream 117094 12391134 ~ 12397148 (+) False usf1
XM_043259409.1 mRNA downstream 117095 12391135 ~ 12397148 (+) False usf1
XM_043259408.1 mRNA downstream 117096 12391136 ~ 12397148 (+) False usf1
unassigned_transcript_2151 other upstream 449784 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 898489 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 1542021 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1879816 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 2062964 10204839 ~ 10207452 (+) True G105248
TU156910 other downstream 568137 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 568137 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 568137 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 1642533 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2642465 14916505 ~ 14916883 (+) False tbx4

Expression Profile