RNA id: TU156439


Basic Information

Item Value
RNA id TU156439
length 244
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G105903
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12275813 ~ 12276056 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGATTGATGCTTCGGAGGTTAGGGAAGAGCCGCTGAAGGATTTCGCCCGAGTCTTGAATGGAGCTCAGGTTGTTGTTGGCCATGACCAGAGTGTCCAGCGCAGGGAACATGGAGCCGAATTTTCGTACTTCACTCCACTCATGGAGGCTGTTATCTGTGATGTGAAGCAGACGCAGTGTGGGGCAGGGCATGGCGGCCGGTGTCACAGTGGTGTACTCATTAAGGCACAGGAACAGCTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156438 lncRNA upstream 403 12274652 ~ 12275410 (+) True G105902
TU156435 lncRNA upstream 1463 12270416 ~ 12274350 (+) True G105900
TU156434 lncRNA upstream 1563 12270600 ~ 12274250 (+) False G105900
TU156436 lncRNA upstream 1773 12270416 ~ 12274040 (+) False G105900
TU156432 lncRNA upstream 1773 12270600 ~ 12274040 (+) False G105900
TU156440 lncRNA downstream 153 12276209 ~ 12276804 (+) True G105904
TU156441 lncRNA downstream 1017 12277073 ~ 12277456 (+) True G105905
TU156452 lncRNA downstream 7852 12283908 ~ 12341892 (+) True G105909
TU156468 lncRNA downstream 10523 12286579 ~ 12289022 (+) True G105918
TU156469 lncRNA downstream 13011 12289067 ~ 12311081 (+) True G105919
XM_043259389.1 mRNA upstream 32580 12215249 ~ 12243233 (+) False ulk2
XM_043259390.1 mRNA upstream 32580 12215249 ~ 12243233 (+) False ulk2
XM_043259388.1 mRNA upstream 32580 12215250 ~ 12243233 (+) True ulk2
XM_043258600.1 mRNA upstream 131622 12098636 ~ 12144191 (+) False sgsm2
XM_043259405.1 mRNA downstream 115078 12391134 ~ 12397148 (+) True usf1
XM_043259407.1 mRNA downstream 115078 12391134 ~ 12397148 (+) False usf1
XM_043259406.1 mRNA downstream 115078 12391134 ~ 12397148 (+) False usf1
XM_043259409.1 mRNA downstream 115079 12391135 ~ 12397148 (+) False usf1
XM_043259408.1 mRNA downstream 115080 12391136 ~ 12397148 (+) False usf1
unassigned_transcript_2151 other upstream 455181 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 903886 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 1547418 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1885213 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 2068361 10204839 ~ 10207452 (+) True G105248
TU156910 other downstream 566121 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 566121 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 566121 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 1640517 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2640449 14916505 ~ 14916883 (+) False tbx4

Expression Profile