RNA id: TU156514


Basic Information

Item Value
RNA id TU156514
length 319
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G105951
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12363118 ~ 12363552 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ataattgttttcaacatttttattaatcatttggttTGTAATCTGGTTTTCAAGAGACCAAAAGTATAACTAGAAATAAATTTACCAATGATAAAGATTATAATATTGAACTTCATCTATATCAAACATCTATATTCAATGAACTACCAAGTGAGGTGCTTCTGTTCTGCATCTTCATTAACAGTGGAAGGAGTATTCGGTCTCTGACTGATCACCTGTGGTAGTAATCATAAACCTTGACCACGGCTGGCCTGAGATTCTTCACTGGAAGAACCTGTTTCATTTGTATCTGATAATTCATTGGAACATTTTTGGGGAT

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0006508 proteolysis biological_process
GO:0005579 membrane attack complex cellular_component
GO:0046930 pore complex cellular_component
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156508 lncRNA upstream 17887 12344842 ~ 12345231 (+) True G105945
TU156452 lncRNA upstream 21226 12283908 ~ 12341892 (+) True G105909
TU156459 lncRNA upstream 21554 12326162 ~ 12341564 (+) True G105913
TU156504 lncRNA upstream 21990 12339627 ~ 12341128 (+) True G105941
TU156500 lncRNA upstream 29055 12333241 ~ 12334063 (+) True G105940
TU156457 lncRNA downstream 63 12363615 ~ 12366159 (+) True G105911
TU156455 lncRNA downstream 2694 12366246 ~ 12381713 (+) False G105910
TU156456 lncRNA downstream 13127 12376679 ~ 12381713 (+) True G105910
TU156557 lncRNA downstream 174979 12538531 ~ 12539442 (+) True G105987
XR_006252655.1 lncRNA downstream 216812 12580364 ~ 12581802 (+) True LOC122358874
XM_043259389.1 mRNA upstream 119885 12215249 ~ 12243233 (+) False ulk2
XM_043259390.1 mRNA upstream 119885 12215249 ~ 12243233 (+) False ulk2
XM_043259388.1 mRNA upstream 119885 12215250 ~ 12243233 (+) True ulk2
XM_043258600.1 mRNA upstream 218927 12098636 ~ 12144191 (+) False sgsm2
XM_043259405.1 mRNA downstream 27582 12391134 ~ 12397148 (+) True usf1
XM_043259407.1 mRNA downstream 27582 12391134 ~ 12397148 (+) False usf1
XM_043259406.1 mRNA downstream 27582 12391134 ~ 12397148 (+) False usf1
XM_043259409.1 mRNA downstream 27583 12391135 ~ 12397148 (+) False usf1
XM_043259408.1 mRNA downstream 27584 12391136 ~ 12397148 (+) False usf1
unassigned_transcript_2151 other upstream 542486 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 991191 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 1634723 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1972518 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 2155666 10204839 ~ 10207452 (+) True G105248
TU156910 other downstream 478625 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 478625 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 478625 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 1553021 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2552953 14916505 ~ 14916883 (+) False tbx4

Expression Profile