RNA id: TU157016


Basic Information

Item Value
RNA id TU157016
length 1155
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G106276
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13335308 ~ 13336677 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTAGTAAGTGTCGTGCTATTGTTGAGCGGTCCACTGTGACGTTTGAAGAAGGTAGCAGCACCGGATCAAGCATCAAGGTAGACATGATGGGATCCAGAAATTCATCTGGAGCATCAGAGTAGGTCTCTTCTTCTTGTTGATGCCTGTCTGCAAGTGACTGAAAGAGACACAGAACATCAACAAGGTTACCATAAACACCCATGACTTCCTGAGAAAGGTGTGTTTCTGAGACAGATATGCATAGTGATTAaatcaaccttaattttatccGCTAAAAGACTGAAAGATACAATCATGTCGCCAGGCTTGTTGATTTTCTTGAGTACGCGAACAGTTTGGCAGAACAGAGTGGGTGAATATGACCTTCCATCTTTTGGGACAGTGGCGCAGAAATTTTCTTCATCTCTGTGACCAAAATAGCATCCATAACAGttaatattattcttaaaataaataaatcaataaaaaaataaataaaaatcaaagagCCTACCCCAGGTTTAGGTAAATAGTACAGATGTCTGACACTAGCTGCTGGGGTTTGAAGTCGAACTCACTGAAGTCTTTCACCTTTAGGGCACCCATCTTGGGGcctaccaggtgctgtaaaaaGTAGTTGAGCATGGAGATGATCCTCTCAGCAAGAAAGGGATGAACAAAAAGACCTTTTTACCAGATGTGAGGAAAGCCAAGGTGCCAATGGTCTCATTTGACATGATGTTGTGGAAGCGACCCAGCTGTCCAAACATCTGCAGACTAGATTCTTTCTCTCTGCGGGCGTCAGGGGCCAGACTGTCCCACTCCCCCCGATCCCTCTCCAGCTGGAGGATTTTGATCTTACTTAAGTACTGAAAGGAACAGATGCACGTGTGAGTGTCACATCTTTAATCAGTCAATTAAATATTCCTGATATCAACTACTTGGAGCTTAAtatgttaatgtaatttaacaGCCAAGCTAAAttgaacaaacaaaatgtgtttccaGTATAAACAGTCGGgatttgcataaaacaaaagcaatctGCATAGGCAGACAAGAACCTGTATAGCCTCGTCAAGTAAGAAGATGGCATCGTTCATGAGGAGATTGAGAAATCTCAGGAAGAGTGGTGGATTCATGGCTTCAAGATTTTCAGATGCATAATCAGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252599.1 lncRNA upstream 379501 12945077 ~ 12955807 (+) True LOC122358384
TU156915 lncRNA upstream 486641 12842177 ~ 12848667 (+) False spa17
TU156914 lncRNA upstream 486894 12842177 ~ 12848414 (+) False spa17
TU156833 lncRNA upstream 554933 12773457 ~ 12780375 (+) True G106157
TU156859 lncRNA upstream 563238 12771795 ~ 12772070 (+) True G106171
TU157129 lncRNA downstream 343503 13680180 ~ 13685449 (+) True G106350
TU157134 lncRNA downstream 355702 13692379 ~ 13692893 (+) True G106354
TU157164 lncRNA downstream 462624 13799301 ~ 13811099 (+) True G106370
TU157176 lncRNA downstream 545444 13882121 ~ 13884081 (+) True G106381
TU157180 lncRNA downstream 576902 13913579 ~ 13913790 (+) True G106385
XM_043259334.1 mRNA upstream 44200 13287279 ~ 13291108 (+) True rnf26
XM_043259891.1 mRNA upstream 84091 13226503 ~ 13251217 (+) False cbl
XM_043259890.1 mRNA upstream 84091 13226505 ~ 13251217 (+) True cbl
XM_043259848.1 mRNA upstream 116089 12957097 ~ 13219219 (+) True grik4
XM_043259849.1 mRNA upstream 116089 12957097 ~ 13219219 (+) False grik4
XM_043259615.1 mRNA downstream 6320 13342997 ~ 13346999 (+) True phykpl
XM_043259782.1 mRNA downstream 42976 13379653 ~ 13382951 (+) True si:dkey-182i3.9
XM_043259853.1 mRNA downstream 46671 13383348 ~ 13389819 (+) True LOC122359520
XM_043259851.1 mRNA downstream 46671 13383348 ~ 13389819 (+) False LOC122359520
XM_043258516.1 mRNA downstream 47052 13383729 ~ 13385498 (+) True LOC122358638
TU156910 other upstream 487930 12842177 ~ 12847378 (+) False spa17
TU156912 other upstream 487930 12842177 ~ 12847378 (+) False spa17
TU156913 other upstream 487930 12842177 ~ 12847378 (+) False spa17
unassigned_transcript_2151 other upstream 1514676 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 1963381 11370636 ~ 11371927 (+) False LOC122358628
TU157171 other downstream 579896 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 1579828 14916505 ~ 14916883 (+) False tbx4
TU157786 other downstream 1584458 14921135 ~ 14925515 (+) False tbx4
TU157969 other downstream 2369836 15706513 ~ 15712439 (+) True G106937
TU157970 other downstream 2369836 15706513 ~ 15710209 (+) False G106937

Expression Profile