RNA id: XM_043258344.1


Basic Information

Item Value
RNA id XM_043258344.1
length 2117
RNA type mRNA
GC content 0.44
exon number 20
gene id aifm4
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13957197 ~ 13961807 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATCCTGAATACACCGctgcagagaaacagacaggTAACAGTTAGCGAACTTGAGAATAGCGCCTTCGCAGGTAAGAAACGTGGAAAATGATAAAGTAAGCAAGGACGTCCAGCAGCATCGCCCTGTCGTACAGATATATGCACCGCGCTGTcttttgttaaatgtcatttCGACTCTGCGCGTGCCGTTTCAGTATTCTGCGAAGCAATTGGAAGCTTccttataaaaaatACGAGCGGACAACACTGTGCTCTTCAACTCCACTTCCACTCTTGAAGGCAAACAGCGGTAGAACTTGACTGACCGGCGTGCCTTGCTGTATAAAGCGGATAAACAAACAATGGAAACCGAGCAGCGTGATGGGGTCACGGAGATGGTGTGTTTAGAGTCAGATTTGCAGGATGGACAAATGAAAGAGGTTGTGGTGGACCAGAATAAAATCCTGCTGGTGCGTAATAATGGAGAATTTACTGCCGTGGGGGGTCTGTGCACTCATTACGGGGCCCCACTTATCAAAGGTGCATTGGTTGGAGATCGAGTCCGTTGCCCATTTCATGGGGCGTGTTTCAGTACTAAAACTGGAGATATTGAAGAATTTCCTGGACTGGACTGTCTGCCTAAATACAAAGTCAAAGTTGAGGGTGGTCAAGTTTACGTGACCACTGATAAAAAGAAACTAAAGAAGCGTGTTAAGAAAATGAGCAGCAGAGTGCCTGGAGTCAGTCACACGGTTGTTCTGATTGGAGGAGGTCCAGCTTCACTGCAGTGTGCAGAAACTCTTCGTCAGAATGGTTATGAAGGGAGAATTATAATGGTTACCAAAGATGAGCAGCTTCCTCTGGATAAGACCAAGCTTAGCAAGGCAATGAACATTGAAATCGAAAAGGTTGTGCTACGACAGAATGAATTCCTTCAGGAGCATGGAATTGATGTGTGGACTAAAAAAGagGTAAAATCTGTTGATACCGGGGCTAAAACTCTGACTTTCACTGATGGCACTATCCAACACTATGACCAGCTCCTGATTTCTACGGGTGGCAGggcCAGACCTCTGCAGTGCCCTGGTGCTGAacttgaaaatgtgaaattgctGGAAAGCTATAAGGACTCCACAGAAATTTATCAAATGAGTTCCGGAAACAAGGCTGTTATTGTTGGAACTTCATTCATAGGAATGGAAGTAGCAGCTTATCTGTCTGATAAGTCAGCCAGCGTCACTGTTATTGGCAGCAGCAGGTTTCCTTTTCAGTCTTCACTGGGTCCAGATATCGGAAAAATGACAATGGAGATGTTGGAAGAGAAAAACGTGAAGTTCTATACAAGTAATGGTGTGGCTGAAATCCGTGGTGAAAACGGAAAGGTTAAGGAAGTGGTTCTGAAAAATGGTGAAGTTCTTCCAGCAGATATCGTGATTGTTGGCATTGGTGTCATCCCCAACTCTCATTTCCTTAAGGAAACATCTCTGGAAATCGATGCACGCAATGCTGTTGTTGTTGACAAGTTCATGAAAACCAACATTCCTGATGTCTTTGCTGCTGGAGATGTGGTGTCCTTTCCACTTCCTTTGGTTGGCCATAAGAGAGTCAATATTGGACACTGGCAGTTGGCGCAGGCTCACGGAAGAATTGCAGGCTTAAGCATGCTGAATCAACAGGTTGCAATAAATACTGTGCCATACTTCTGGACCATGCTGTTGGGAAAAAGTATCCGATATACAGGATATGGAGAAGGATACACTGACATTGTTTTCAAAGGAAGCACAGAGGAAAGAAAATTCTTGGCTTTTTATATCAAAGATGAAGAAGTTGTTGCAGCTGCCAGCTTGAACTTTGACCCTGCTGTCGCAAGGTTGGCAGAAATGTTACTGATGGGGAAGAGGATCACTAAGACTCAGGCACAATCTGATGACCTCAGCTGGTTGCAGCTCCCATGAAAGTGCTTTGGCAACACTTACCTCAATGACTGCATTGATTATAGATTGTCCCTCCGTCGTTATATTTGACTGACTGACCTTTAACGTTTGTAACAAAGACTAATTGTTTTATCTTCGATATAAGCTTTTTCCACATAAATGTACTCTTTTACTGGAAGGAATAAACAGTTGTCATGCAGTTA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156980 lncRNA upstream 41527 13915241 ~ 13915685 (+) True G106249
TU157180 lncRNA upstream 43422 13913579 ~ 13913790 (+) True G106385
TU157176 lncRNA upstream 73131 13882121 ~ 13884081 (+) True G106381
TU157164 lncRNA upstream 146113 13799301 ~ 13811099 (+) True G106370
TU157134 lncRNA upstream 264319 13692379 ~ 13692893 (+) True G106354
TU157505 lncRNA downstream 120244 14082051 ~ 14083858 (+) True G106603
TU157524 lncRNA downstream 204586 14166393 ~ 14166613 (+) True G106614
TU157521 lncRNA downstream 205177 14166984 ~ 14178264 (+) False LOC122359060
XR_006252681.1 lncRNA downstream 205254 14167061 ~ 14174548 (+) False LOC122359060
TU157523 lncRNA downstream 208740 14170547 ~ 14175557 (+) True LOC122359060
XM_043258793.1 mRNA upstream 160367 13775064 ~ 13796845 (+) True LOC122358866
XM_043259453.1 mRNA upstream 201120 13752142 ~ 13756092 (+) True LOC122359191
XM_043259454.1 mRNA upstream 201120 13752142 ~ 13756092 (+) False LOC122359191
XM_043258318.1 mRNA upstream 289801 13604091 ~ 13667411 (+) True LOC122358500
XM_043258321.1 mRNA upstream 363533 13577004 ~ 13593679 (+) False LOC122358501
XM_043259197.1 mRNA downstream 646 13962453 ~ 13975188 (+) True pak4
XM_043259951.1 mRNA downstream 15037 13976844 ~ 13981992 (+) True zgc:152863
XM_043259950.1 mRNA downstream 15038 13976845 ~ 13981992 (+) False zgc:152863
XM_043259906.1 mRNA downstream 33919 13995726 ~ 14003601 (+) True npat
XM_043259712.1 mRNA downstream 81931 14043738 ~ 14053249 (+) True tsr1
TU157171 other upstream 39950 13916573 ~ 13917262 (+) True G106376
TU156910 other upstream 1109834 12842177 ~ 12847378 (+) False spa17
TU156912 other upstream 1109834 12842177 ~ 12847378 (+) False spa17
TU156913 other upstream 1109834 12842177 ~ 12847378 (+) False spa17
unassigned_transcript_2151 other upstream 2136580 11820561 ~ 11820632 (+) True trnap-cgg_29
TU157784 other downstream 954698 14916505 ~ 14916883 (+) False tbx4
TU157786 other downstream 959328 14921135 ~ 14925515 (+) False tbx4
TU157969 other downstream 1744706 15706513 ~ 15712439 (+) True G106937
TU157970 other downstream 1744706 15706513 ~ 15710209 (+) False G106937
TU158204 other downstream 1919307 15881114 ~ 15883510 (+) True G107107

Expression Profile