RNA id: TU157952


Basic Information

Item Value
RNA id TU157952
length 371
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G106926
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 15510317 ~ 15511110 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACCCTTTCCTCTCATGAGGGCCTAGTTTCTAAATTTTCCTCACGCTGTAGGTACCTGAGTTTTTCTGGTTGGTGACAGGCTTGCCCTCTGTGGGAATGCTGTGCTGGAAGACGTGTACTGTGTCCTGGACCGTCTGCCGGTGAAGACACACCTCTAATGGGTCAATGCAGGTCGAGACGTTCTGGGCGAGGAGATATTGTGGCTCCGAGCGGAAGCGTTTGATAAAAGCCGATGCTTTCTCCTGACTCAGGCATCTGTAGTAGGAAACAGCTCGGGCTAGTTAGCTGCACAATGCTACTCCATTCATATCAACGTTTGTGAAGCTCTGAGCCCTCAACCCGCACCTACGAGCTGCGAGAGACAATATTTA

Function

GO: NA

KEGG:

id description
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157909 lncRNA upstream 27645 15397722 ~ 15482672 (+) True G106898
TU157869 lncRNA upstream 219154 15290829 ~ 15291163 (+) True G106873
TU157868 lncRNA upstream 219831 15290156 ~ 15290486 (+) True G106872
TU157852 lncRNA upstream 264503 15245605 ~ 15245814 (+) True G106863
TU157844 lncRNA upstream 270605 15239383 ~ 15239712 (+) True G106860
TU157978 lncRNA downstream 126064 15637174 ~ 15638029 (+) True G106941
TU158213 lncRNA downstream 383023 15894133 ~ 15894624 (+) True G107113
TU158264 lncRNA downstream 489105 16000215 ~ 16002131 (+) True G107136
TU158271 lncRNA downstream 558374 16069484 ~ 16069741 (+) True G107141
TU158283 lncRNA downstream 578647 16089757 ~ 16115455 (+) False G107148
XM_043258433.1 mRNA upstream 62844 15424339 ~ 15447473 (+) True ankrd13b
XM_043258431.1 mRNA upstream 62844 15424343 ~ 15447473 (+) False ankrd13b
XM_043258432.1 mRNA upstream 65221 15424343 ~ 15445096 (+) False ankrd13b
XM_043259872.1 mRNA upstream 108364 15395001 ~ 15401953 (+) True pitpnaa
XM_043259632.1 mRNA upstream 116228 15374883 ~ 15394089 (+) True slc43a2a
XM_043258650.1 mRNA downstream 4994 15516104 ~ 15567549 (+) True nova2
XM_043258651.1 mRNA downstream 5006 15516116 ~ 15567549 (+) False nova2
XM_043259657.1 mRNA downstream 113106 15624216 ~ 15636880 (+) True LOC122359367
XM_043258517.1 mRNA downstream 133453 15644563 ~ 15647849 (+) True LOC122358640
XM_043258305.1 mRNA downstream 147878 15658988 ~ 15661655 (+) True LOC122358489
TU157786 other upstream 584802 14921135 ~ 14925515 (+) False tbx4
TU157784 other upstream 593434 14916505 ~ 14916883 (+) False tbx4
TU157171 other upstream 1593055 13916573 ~ 13917262 (+) True G106376
TU156912 other upstream 2662939 12842177 ~ 12847378 (+) False spa17
TU157969 other downstream 195403 15706513 ~ 15712439 (+) True G106937
TU157970 other downstream 195403 15706513 ~ 15710209 (+) False G106937
TU158204 other downstream 370004 15881114 ~ 15883510 (+) True G107107
XR_006252631.1 other downstream 493760 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other downstream 493760 16004870 ~ 16043265 (+) False gdpd5b

Expression Profile