RNA id: XR_006252675.1


Basic Information

Item Value
RNA id XR_006252675.1
length 2690
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id LOC122359009
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 16783079 ~ 16787674 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaagaaattataacgGCTTCTAACCGGTCCTAAGCTGGCAGGTCCAGCAACAAATCAGCTAGCAGCTGGTCAAACTACCATCTTAAAATGGTAAAGATGGCTTGTGGAATATGTAACTTAACATGACCAACCAGCAACTGATCAACTTAAAAACTACGTTAGGTAATGCTACTATGTGCCAAAACATGGTCATAGCAGCTGAAGGTGATCACTATGATTTTTTGCAAAATAGCATAAGGTCTATTAGCTAATGTTTATCGATTTAACCGCGGCTCCTTAATTAGTCGACTTCAATTAACGTACGAGACCTGTTATTTATCCTTTAGAGTTGAACTCAGATTTGGCGACACCGTTAGCCGCTATAGCTAAAGCGTTCCGGGCGCTTTGGATAGCGGGTAGCACTGGCGCAATGTCAAACGCACGCTGTCGAATCAATGAAGGGGGAAATCATTTTAGAAGATGAAATGGCTGCATGCGAGATGGTTCAAATCAGCTTGGATGTCAAGCAAAAGGCGACGGGAGGACTAATCAGAGAGGCGGCTAAAATGGGCTCCCTCTCTTGCGCTATTTAAGCTTCACCTATCCTGAATATATAAGgttGTTTGGCAGTTTCTGAGGTGATAAACATCAGATACAGGTATCATCTTGGCATTTAAACTAGATAGAACTAGAGTAAAAATGGACTGCACATGTTAGACAGCAGGGTAACAGGGTTGAGGGAAACTTTTATTACGAACACTGGTATAATTAAATTGCCATGTTATACATGTACAGCAACTAACCGCTTTACAAAAAAGCAAGTAATACAATATCACATATATTTacacttgtatttatataccttccaattttacataaacatatttacagGTGACAGATACATTGTTTACAGATGaccaatgcaattaaaaatgtggCAATGCATCAGACGAACacattttgaattatataaaataaaccactttttagtctgtttatgATGAGAACATTAcatatgcaatttaaaatgcttAGGGGCATGTCGTGTGTCCTATCCGCCTGACACGGCAGTCAAGACTGTGCCTTCATTATTGTCTTAAAGTTTTGACGCATCAGATCAAGTCAGTTTTAGATTGGTAGTAGCAATGCAACATCAAAGATTAAAGGAAAAGGAGTTATATTCTGGTTATTAGTAAtggatgcaaaaaaagaaaacaaatcttacATTTCAAACGCTTGACTGGGTCATTATGTTCcttcatattttcaatttaagaACTGTAAATTTGACATGCCATTACGACACCGAGAAGGAATAAGCATTTCAAGTTTGatttttgatcaatgtaatCTGAAATCTGCTGTCGGGATGACATTTCACTGTAAATACTAAGTGCCCTAAAATGACCACAAGTCAGCATGAACGTACATTTTTGGATCTGCAGTATAGTACGTAGTAAAACATACGAAAACgtaaaataaatctacaaacGAAATGGGAAAATGACATTGATTTGGTCCCAATTTTAAGTGCGAAACACTTCTCAATGCAATCCtttcagaaacataaaaataaatttatgcataaatattccGTCCTCAAACATTTGGCAGGTACCCTTCTTTAGTAATACAAGTTTCCCTTTAATAAGCATTTCAAAGAGACAATGTACTTGAGTCTGTTACTAGGTACGCTACCGTTTCCTCCTTTGTAGATTTGCAGATTGGCATAATGACAGAAACGTAATGCAGAAAAcatattgcacacaaaaaaataaaataatcgcCCGCTTCAAAATTTGATGGCCATCTTATGTTAAATACACAGTGAAGCCCTGAAAATGGCATGTTAAGTCAAACTTAAATGGCACAATTGTGTTAAATTTTGCAATTCACTAGTTAGGCGACGAGTGAGAAAACGATTAAattaaactgcaaaaacaagGTTACAAAGCTATTGAGATCTGCATGGAAGAAATAATTAAGGCATACGACGTAGACGAGACagacataaaatatacaaaatggaGTTCACAACAGTTTCCCCTCACAATATTGCAAACTAGTCTTTGGTGCAATGTTACTATGTCAGCTTGTGGTAGGATTGGGATTCCTGTGCCGTACGTGAGATATTAGTGAGACGGGAACAGGAAAAGGTAAAAGTGTGCATGGAAATTTCCTGATCACACACCTAAATCATGTGCAACTTGTATACACATAGTGTTCAacgaaacaaataaaaaacatattgcaCCACAGTGAGACAATGCTAAAACATGTATATTAATGCCAATTCGTCGTGTTTGATTTGTGCATTTCgggaacaaaaaaacaaaacaaaaataaacatactcaTCCGCTGCTCttctagaatttttttttttttttttttttttttttgactgatgaTAACGATCTCCAAGCAAACCTTCATGTGATCTCCGAAAACATTATCTacatttacagaataaatatttagatgcTGCAGTATGATATTCTCGTAGTTGATGGTCACATGGTACAGTTTACACCGTAGCGACGTATAGACAATATGGTAAATGTTAAAGCCACGGTGTTTTCGTAATTAGTACCTGTTTTCCCTTCCTTAGCAAGGTCTTGCCTATTTTACAAACTATACACAGCTGAAAACCCTGACAAAGGCACACAATGGATAAAAGAAGAACCCAAAACATGTGATCGTTATTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252654.1 lncRNA upstream 204423 16529280 ~ 16578656 (+) True LOC122358872
TU158428 lncRNA upstream 222356 16529280 ~ 16560723 (+) False LOC122358872
XR_006252626.1 lncRNA upstream 425457 16336814 ~ 16357622 (+) True LOC122358549
TU158393 lncRNA upstream 438424 16344382 ~ 16344655 (+) True G107232
XR_006252625.1 lncRNA upstream 440349 16336814 ~ 16342730 (+) False LOC122358549
TU158488 lncRNA downstream 71229 16858235 ~ 16859096 (+) True G107305
TU158491 lncRNA downstream 72698 16859704 ~ 16860627 (+) True G107307
TU158492 lncRNA downstream 73764 16860770 ~ 16860988 (+) True G107308
TU158493 lncRNA downstream 74181 16861187 ~ 16861477 (+) True G107309
TU158445 lncRNA downstream 93651 16880657 ~ 16882321 (+) True G107272
XM_043258253.1 mRNA upstream 254918 16525725 ~ 16528161 (+) False mrps23
XM_043258252.1 mRNA upstream 254918 16525726 ~ 16528161 (+) True mrps23
XM_043258237.1 mRNA upstream 257421 16514348 ~ 16525658 (+) True nos2b
XM_043258238.1 mRNA upstream 257421 16514348 ~ 16525658 (+) False nos2b
XM_043258240.1 mRNA upstream 268858 16513308 ~ 16514221 (+) True lyrm9
XM_043259075.1 mRNA downstream 18418 16805424 ~ 16807691 (+) True LOC122359007
XM_043259077.1 mRNA downstream 22231 16809237 ~ 16816847 (+) True omgb
XM_043259076.1 mRNA downstream 22231 16809237 ~ 16812864 (+) False omgb
XM_043259338.1 mRNA downstream 171153 16958159 ~ 16959238 (+) True LOC122359144
XM_043258166.1 mRNA downstream 179427 16966433 ~ 16967368 (+) True LOC122358372
TU158422 other upstream 268919 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 546738 16089757 ~ 16236341 (+) True G107148
XR_006252631.1 other upstream 739814 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other upstream 739814 16004870 ~ 16043265 (+) False gdpd5b
TU158204 other upstream 899569 15881114 ~ 15883510 (+) True G107107
TU158844 other downstream 1045066 17832072 ~ 18116953 (+) True G107558
TU158847 other downstream 1072905 17859911 ~ 17860653 (+) False G107558
TU158878 other downstream 1258011 18045017 ~ 18046904 (+) True G107574
TU158879 other downstream 1258011 18045017 ~ 18046034 (+) False G107574
TU159142 other downstream 1969337 18756343 ~ 18758836 (+) True G107756

Expression Profile