RNA id: TU158666


Basic Information

Item Value
RNA id TU158666
length 280
lncRNA type inter_gene
GC content 0.69
exon number 1
gene id G107427
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17105067 ~ 17105346 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGAGTCCTGCGTGGAGGACGACAGGCTGCTCTGACTCCCTTCTGTGTCCATTCCCGTGTCCCTCTGTTGCCCGGACTGTGAGCCGAACGGGAGCCAGGAGTCTCCAACTCAAGAGCGGGTGGCCCGAGGGGGTGGGGGAGGGAGGGCCCGTCTGGAGGAGGCCGGGCCAGGCGTGGTTTGCGCACACACCGAGGCGCCGCCTCCCGTTTGACTTTTCCCGGACTCTCGTAGTTCGCCCCGCCCCCTCTTCCTCCCCGGCCCCGCCCGCTTTCATCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158663 lncRNA upstream 14094 17086659 ~ 17090973 (+) True G107424
TU158445 lncRNA upstream 222746 16880657 ~ 16882321 (+) True G107272
TU158493 lncRNA upstream 243590 16861187 ~ 16861477 (+) True G107309
TU158492 lncRNA upstream 244079 16860770 ~ 16860988 (+) True G107308
TU158491 lncRNA upstream 244440 16859704 ~ 16860627 (+) True G107307
TU158681 lncRNA downstream 90157 17195503 ~ 17195885 (+) True G107437
TU158683 lncRNA downstream 90808 17196154 ~ 17198330 (+) True G107438
TU158686 lncRNA downstream 93109 17198455 ~ 17199613 (+) True G107440
TU158688 lncRNA downstream 93407 17198753 ~ 17199613 (+) False G107440
TU158696 lncRNA downstream 95062 17200408 ~ 17200937 (+) True G107443
XM_043259568.1 mRNA upstream 16541 17086908 ~ 17088526 (+) True LOC122359259
XM_043259570.1 mRNA upstream 16541 17086908 ~ 17088526 (+) False LOC122359259
XM_043259155.1 mRNA upstream 67142 17031073 ~ 17037925 (+) False LOC122359039
XM_043259154.1 mRNA upstream 70366 17031073 ~ 17034701 (+) True LOC122359039
XM_043259156.1 mRNA upstream 76352 17026879 ~ 17028715 (+) True LOC122359040
XM_043258168.1 mRNA downstream 19476 17124822 ~ 17125802 (+) True LOC122358375
XM_043259509.1 mRNA downstream 54684 17160030 ~ 17161016 (+) True or40a1
XM_043259662.1 mRNA downstream 62419 17167765 ~ 17168715 (+) True LOC122359375
XM_043258528.1 mRNA downstream 105194 17210540 ~ 17211529 (+) True LOC122358664
XM_043258350.1 mRNA downstream 120765 17226111 ~ 17227094 (+) True LOC122358512
TU158422 other upstream 590907 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 868726 16089757 ~ 16236341 (+) True G107148
XR_006252631.1 other upstream 1061802 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other upstream 1061802 16004870 ~ 16043265 (+) False gdpd5b
TU158204 other upstream 1221557 15881114 ~ 15883510 (+) True G107107
TU158844 other downstream 726726 17832072 ~ 18116953 (+) True G107558
TU158847 other downstream 754565 17859911 ~ 17860653 (+) False G107558
TU158878 other downstream 939671 18045017 ~ 18046904 (+) True G107574
TU158879 other downstream 939671 18045017 ~ 18046034 (+) False G107574
TU159142 other downstream 1650997 18756343 ~ 18758836 (+) True G107756

Expression Profile