RNA id: TU158686


Basic Information

Item Value
RNA id TU158686
length 1159
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G107440
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17198455 ~ 17199613 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTGGtaggtttggagttctgttgggactggttagggtctggagggcttttttgATGAGTGATTGGTCTGAACGAATGTAGCTTTTGTATGCGTTAGAAGACCAGCGGCCGAGggtttggatttgctgttggaagagacctttctctgctgcagtggtggctgcccctattctgaaggaatgtgtggagaaatttttttttttttttttttttttttttttttttttttttgatggattCCGCAGTAAGAtaggactgatttgaggtgcttttggaaccagaatcgagatacggggtggttggaatcatctgtgaacagagggtcgagtggagttttagtttgggatttcctgtattggaggaaagctagaagtgtttaaaggggaaaagtaggagtttggaggttaaaaatatatatgaaatgcccatttttggtctggtccgttttactttgtttgatgaaaaaggatACGGTTTCGTGGTCTACGATAGATAGGTCGGAAATAGTGGGGTGAATATTTGGGTCGAATCtggagttgactgtaaattctgaacatctgaggaaaccgaaaaaggccagaatgaacattgcatcgaGAGTGCGAGcagtatggatagaagagtagcctctgcggagggtggatatgcattttgagagaatttcgagggtgatgggcatccttgagtcggatcgggagggatgccttctttggatgcccttgattaaaaagtgaagtctgagcattggttatttgaggtgaggCGATGCCGTGGATGAGTTCATGGAAAAATTGGATACCACTCAAGTAGCCCTTAATAGAACTGacttgcagggtttttttttttttttttttttttttttttttttttttttttttttgaggtgttaagaaaggagatgaaagaagtgatggatagcagggaaaaatcagggaattggagttataccttgcctggaaagatttaaagcatttccaagcggtcaggtaagattgcagggttctgtgagaaactgcttgtaggatTGAGTCGAGGGAGGCTTCGAGgagggaccttaaaggatggttcgctggaatattagttgtgaaaagagaagcacctgggttgcatagggttccgcttctggtgccagcatcctggatttctgcaaggatctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158683 lncRNA upstream 125 17196154 ~ 17198330 (+) True G107438
TU158681 lncRNA upstream 2570 17195503 ~ 17195885 (+) True G107437
TU158666 lncRNA upstream 93109 17105067 ~ 17105346 (+) True G107427
TU158663 lncRNA upstream 107482 17086659 ~ 17090973 (+) True G107424
TU158445 lncRNA upstream 316134 16880657 ~ 16882321 (+) True G107272
TU158696 lncRNA downstream 795 17200408 ~ 17200937 (+) True G107443
TU158701 lncRNA downstream 109732 17309345 ~ 17314661 (+) True G107447
TU158706 lncRNA downstream 254681 17454294 ~ 17457686 (+) True G107450
TU158729 lncRNA downstream 280235 17479848 ~ 17480048 (+) True G107468
TU158739 lncRNA downstream 366580 17566193 ~ 17566876 (+) True G107477
XM_043259662.1 mRNA upstream 29740 17167765 ~ 17168715 (+) True LOC122359375
XM_043259509.1 mRNA upstream 37439 17160030 ~ 17161016 (+) True or40a1
XM_043258168.1 mRNA upstream 72653 17124822 ~ 17125802 (+) True LOC122358375
XM_043259568.1 mRNA upstream 109929 17086908 ~ 17088526 (+) True LOC122359259
XM_043258528.1 mRNA downstream 10927 17210540 ~ 17211529 (+) True LOC122358664
XM_043258350.1 mRNA downstream 26498 17226111 ~ 17227094 (+) True LOC122358512
XM_043259557.1 mRNA downstream 29513 17229126 ~ 17230142 (+) True LOC122359253
XM_043259550.1 mRNA downstream 32978 17232591 ~ 17233607 (+) True LOC122359245
XM_043259567.1 mRNA downstream 39719 17239332 ~ 17240345 (+) True LOC122359258
TU158422 other upstream 684295 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 962114 16089757 ~ 16236341 (+) True G107148
XR_006252631.1 other upstream 1155190 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other upstream 1155190 16004870 ~ 16043265 (+) False gdpd5b
TU158204 other upstream 1314945 15881114 ~ 15883510 (+) True G107107
TU158844 other downstream 632459 17832072 ~ 18116953 (+) True G107558
TU158847 other downstream 660298 17859911 ~ 17860653 (+) False G107558
TU158878 other downstream 845404 18045017 ~ 18046904 (+) True G107574
TU158879 other downstream 845404 18045017 ~ 18046034 (+) False G107574
TU159142 other downstream 1556730 18756343 ~ 18758836 (+) True G107756

Expression Profile