RNA id: TU158729


Basic Information

Item Value
RNA id TU158729
length 201
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G107468
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17479848 ~ 17480048 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttcacgtaaacatcaattaaattaattttacagatGCTTAAATGTTTAGAACTGTATCACTAAATAGAGAAATGCCTCGCAGTGAAagaagatttttaaaagtgtttcaaAGTTGAGTGATGACATAGAAAGGCAGCTAACACCACCCCCCTGTGGCTGCTCGGACATAGAAATCAACTCTGATTACATGTAAGATTATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158706 lncRNA upstream 22162 17454294 ~ 17457686 (+) True G107450
TU158701 lncRNA upstream 165187 17309345 ~ 17314661 (+) True G107447
TU158696 lncRNA upstream 278911 17200408 ~ 17200937 (+) True G107443
TU158686 lncRNA upstream 280235 17198455 ~ 17199613 (+) True G107440
TU158688 lncRNA upstream 280235 17198753 ~ 17199613 (+) False G107440
TU158739 lncRNA downstream 86145 17566193 ~ 17566876 (+) True G107477
TU158831 lncRNA downstream 330285 17810333 ~ 17811203 (+) False trim3a
TU158832 lncRNA downstream 336084 17816132 ~ 17816825 (+) True G107547
TU158846 lncRNA downstream 352024 17832072 ~ 17837858 (+) False G107558
TU158850 lncRNA downstream 352024 17832072 ~ 17837858 (+) False G107558
XM_043258535.1 mRNA upstream 1647 17463303 ~ 17478201 (+) True wdr95
XM_043258396.1 mRNA upstream 16725 17460427 ~ 17463123 (+) True LOC122358547
XM_043258534.1 mRNA upstream 44249 17434652 ~ 17435599 (+) True LOC122358675
XM_043258533.1 mRNA upstream 46608 17432251 ~ 17433240 (+) True LOC122358674
XM_043259760.1 mRNA upstream 49717 17429181 ~ 17430131 (+) True LOC122359453
XM_043259698.1 mRNA downstream 9402 17489450 ~ 17549642 (+) True b3glcta
XM_043259694.1 mRNA downstream 69728 17549776 ~ 17566071 (+) True rxfp2b
XM_043259696.1 mRNA downstream 69728 17549776 ~ 17566071 (+) False rxfp2b
XM_043259695.1 mRNA downstream 69728 17549776 ~ 17566071 (+) False rxfp2b
XM_043258454.1 mRNA downstream 92377 17572425 ~ 17623054 (+) True frya
TU158422 other upstream 965688 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 1243507 16089757 ~ 16236341 (+) True G107148
XR_006252631.1 other upstream 1436583 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other upstream 1436583 16004870 ~ 16043265 (+) False gdpd5b
TU158204 other upstream 1596338 15881114 ~ 15883510 (+) True G107107
TU158844 other downstream 352024 17832072 ~ 18116953 (+) True G107558
TU158847 other downstream 379863 17859911 ~ 17860653 (+) False G107558
TU158878 other downstream 564969 18045017 ~ 18046904 (+) True G107574
TU158879 other downstream 564969 18045017 ~ 18046034 (+) False G107574
TU159142 other downstream 1276295 18756343 ~ 18758836 (+) True G107756

Expression Profile