RNA id: TU158844


Basic Information

Item Value
RNA id TU158844
length 705
RNA type TUCP
GC content 0.42
exon number 5
gene id G107558
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17832072 ~ 18116953 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagagagagagaataaatagACAGAAacaaagctgataaaaacagatGTACGGAGACATGCTGCTACATAtacaaaaagctaaaaatggacttaattacatgttttaataaacatgccCCAACACATCCATAGAGAAAGATCCTGTTTATGGAAACTTTTTTCTGGGCTCTGTCTACTGGTGTGTTTTCTGgctatatgtttttatatgggaaatgaaagaaagaaacgcCCTTCACCCAGATTTCTGTCTCAGCACAGTGCAGAAGGCCACAAATCTTCAAACTCAGGAATAGGTTTAAATGGGTTACAACAGGCTGTTTACTGGGCAGAGCCTGACAGACCAATCACAGATGTGTCCATGAGTACTAGTCCAGCTCACACCACATTCATCATAGAGAACCTGAAAGAGAGCTACCAAATTGGTGAGGAGCTTATTGTTACAGTGCAAGCAAAGGACTTTGGTAATAAATCTAAGAGTTATGGAGGTGACTTTTTTCAAGCCAAGCTGTTCTCGTCTGATCAAAAGGCCAGTGTTTTTGGGGAGGTGGTGGATCTACTCAACGGTTCCTACTCTGTTCGTTTTCTCCTGCCGTGGGTCGGTGAGGCTCAGGTAGCTGTGCGTCTAATTCACTCCAGTGAAGCTGTGCAGGTCCTAAAGCGTCACAGAGATACTGACTCTGACAGAGTGTACTTTAATGGATAT

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158832 lncRNA upstream 15247 17816132 ~ 17816825 (+) True G107547
TU158831 lncRNA upstream 20869 17810333 ~ 17811203 (+) False trim3a
TU158739 lncRNA upstream 265196 17566193 ~ 17566876 (+) True G107477
TU158729 lncRNA upstream 352024 17479848 ~ 17480048 (+) True G107468
TU158706 lncRNA upstream 374386 17454294 ~ 17457686 (+) True G107450
XR_006252642.1 lncRNA downstream 325742 18442695 ~ 18443413 (+) True LOC122358786
TU159041 lncRNA downstream 408652 18525605 ~ 18526233 (+) True G107688
TU159042 lncRNA downstream 416596 18533549 ~ 18534339 (+) True G107689
TU159046 lncRNA downstream 442527 18559480 ~ 18559755 (+) True G107693
TU159080 lncRNA downstream 553377 18670330 ~ 18675897 (+) True G107713
XM_043258283.1 mRNA upstream 21304 17789845 ~ 17810768 (+) False trim3a
XM_043258285.1 mRNA upstream 21304 17798086 ~ 17810768 (+) True trim3a
XM_043258150.1 mRNA upstream 44203 17778597 ~ 17787869 (+) True fhdc4
XM_043259955.1 mRNA upstream 54519 17769204 ~ 17777553 (+) True arfip2a
XM_043259958.1 mRNA upstream 54519 17769209 ~ 17777553 (+) False arfip2a
XM_043259084.1 mRNA downstream 104319 18221272 ~ 18237305 (+) True trpc4b
XM_043259085.1 mRNA downstream 123696 18240649 ~ 18254051 (+) True postnb
XM_043259086.1 mRNA downstream 123697 18240650 ~ 18254051 (+) False postnb
XM_043259182.1 mRNA downstream 153083 18270036 ~ 18283210 (+) True spartb
XM_043259183.1 mRNA downstream 153083 18270036 ~ 18283210 (+) False spartb
TU158422 other upstream 1317912 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 1595731 16089757 ~ 16236341 (+) True G107148
XR_006252631.1 other upstream 1788807 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other upstream 1788807 16004870 ~ 16043265 (+) False gdpd5b
TU158204 other upstream 1948562 15881114 ~ 15883510 (+) True G107107
TU159142 other downstream 639390 18756343 ~ 18758836 (+) True G107756
TU159144 other downstream 642629 18759582 ~ 18760497 (+) True G107757
TU159161 other downstream 677127 18794080 ~ 18795982 (+) True si:dkey-30e9.6
TU159167 other downstream 725323 18842276 ~ 18843855 (+) True G107777
XR_006252666.1 other downstream 876392 18993345 ~ 18995960 (+) True LOC122358990

Expression Profile