RNA id: TU158850


Basic Information

Item Value
RNA id TU158850
length 274
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G107558
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17832072 ~ 18116953 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagagagagagaataaatagACAGAAacaaagctgataaaaacagatGTACGGAGACATGCTGCTACATAtacaaaaagctaaaaatggacttaattacatgttttaataaacatgccCCAACACATCCATAGAGAAAGATCCTGTTTATGGAAACTTTTTTCTGGGCTCTGTCTACTGGTGTGTTTTCTGGAATAGGTTTAAATGGGTTACAACAGGCTGTTTACTGGGCAGAGCCTGACAGACCAATCACAGATGTGTCCATGAGTACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158832 lncRNA upstream 15247 17816132 ~ 17816825 (+) True G107547
TU158831 lncRNA upstream 20869 17810333 ~ 17811203 (+) False trim3a
TU158739 lncRNA upstream 265196 17566193 ~ 17566876 (+) True G107477
TU158729 lncRNA upstream 352024 17479848 ~ 17480048 (+) True G107468
TU158706 lncRNA upstream 374386 17454294 ~ 17457686 (+) True G107450
XR_006252612.1 lncRNA downstream 20049 17857907 ~ 17859804 (+) False LOC122358482
XR_006252613.1 lncRNA downstream 21042 17858900 ~ 17859798 (+) True LOC122358482
XR_006252610.1 lncRNA downstream 216410 18054268 ~ 18072232 (+) True LOC122358481
TU158859 lncRNA downstream 216410 18054268 ~ 18067118 (+) False LOC122358481
XR_006252611.1 lncRNA downstream 223094 18060952 ~ 18072232 (+) False LOC122358481
XM_043258283.1 mRNA upstream 21304 17789845 ~ 17810768 (+) False trim3a
XM_043258285.1 mRNA upstream 21304 17798086 ~ 17810768 (+) True trim3a
XM_043258150.1 mRNA upstream 44203 17778597 ~ 17787869 (+) True fhdc4
XM_043259959.1 mRNA upstream 54519 17769225 ~ 17777553 (+) False arfip2a
XM_043258537.1 mRNA downstream 199255 18037113 ~ 18039299 (+) True LOC122358680
XM_043259084.1 mRNA downstream 383414 18221272 ~ 18237305 (+) True trpc4b
XM_043259085.1 mRNA downstream 402791 18240649 ~ 18254051 (+) True postnb
XM_043259086.1 mRNA downstream 402792 18240650 ~ 18254051 (+) False postnb
XM_043259182.1 mRNA downstream 432178 18270036 ~ 18283210 (+) True spartb
TU158422 other upstream 1317912 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 1595731 16089757 ~ 16236341 (+) True G107148
XR_006252631.1 other upstream 1788807 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other upstream 1788807 16004870 ~ 16043265 (+) False gdpd5b
TU158204 other upstream 1948562 15881114 ~ 15883510 (+) True G107107
TU158847 other downstream 22053 17859911 ~ 17860653 (+) False G107558
TU158878 other downstream 207159 18045017 ~ 18046904 (+) True G107574
TU158879 other downstream 207159 18045017 ~ 18046034 (+) False G107574
TU159142 other downstream 918485 18756343 ~ 18758836 (+) True G107756
TU159144 other downstream 921724 18759582 ~ 18760497 (+) True G107757

Expression Profile