RNA id: XR_006252610.1


Basic Information

Item Value
RNA id XR_006252610.1
length 3503
lncRNA type inter_gene
GC content 0.39
exon number 6
gene id LOC122358481
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 18054268 ~ 18072232 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGTTTTTGTGTAACCCAGCTGTTGGATTAGTTGACCATTAAAATGATATACCCTTCCCCCTACCTCTTACAAAATAACCCATCTGATGGATTACAGTCGAAAtactttcagtaaaaaaaaataggAGTCACAGCATCGGCTTCTTTCGGCTACGGGTGAAACGCGAGGCCGCGGTCTGAAGTTCTCAGTTTCCCCGGGGAATAACAGCCCATTACCGGCTCAGATTTCAGCGACACGCCCGCACGGGAATCAACAGgcaCTCTGTTGTCGTCTGAGGTGTAAAATGTTGAGTGCTACAGACAAAAGACGTCCACACATCATTCAGGACCTGCACAGCTTCACTGGAGTGAATTAGACGCACAGCTACCTGAGCCTCACCGACCCACGGCAGGAGAAAACGAACAGAGTAGGAACCGTTGAGTAGATCCACCACCTCCCCAAAAACACTGGCCTGTAACAGAAAAACAGTGAGAGAACTTTTTCTCTCTGACCCAGcACCCATTCTCCAGGGTATATCGAGGTGTGAGAAGCAAGAAGGGCCGTAACTTGACGACATGAAAGCTCTTAAGGAGCACTTTCTATCGTCAAAAGTACTGTCATACATTCATCCATTTGTATTATAAGACAAGCAAACAAAGTTTTTTTCTGGATTTGCACAAATGAATTGTTCACCACGAAAATAGCTagctaagaaaataaatatattcaattttgatttcatggggactttaatgtttattttgtagtaatatGGCTGTCAAATTTAATGCTGTCACGAGTGTGGTTTGCGAGAGAGAGCACTCAACgaggaaaaataaacttaattttaatcttcTAGGAACGAAATAAACACTACAGTTACAGGCTGACAGACAGGACAACAAAAAggagtccacatgtgtgacaaATGCGTTcattgagtgattttttttttttactgataccCATGAGCGAACTAAGCGGCTCCTTAGGGCCCTCAAGAGTGGCCTACATAAagtgacattttgttttatttcatttatttaatttgtaatatataataccTATGGGCAATggtaattatacaaatattaaaaaaatttgcacATATTAAAGGGTTAAATTCACCATGTTTTGGGGGTGGAGGAGGGATAAATTCGACATGGGGGGTTTGTGTCAGCCAGGGGTGCGTTTCTTAAAACCATCGTTAGCTAACTATGATCAATCTTGTTATTTCTATTGAACTCTATTGGTAGCGACGGAACTTGCGCCCATAGTTGCTGTTGGGAAACGTACCCCTGATCAGATCAGAGCACAGTTAATTAGCACAACCTACTTAGGGTATACTTTTGTTTTAGCGAAGAACATCAAACATCAGCAaatggacattttaaaataatgtatcatTTTACTTAAAAGTAACTTTCTAGTAACTGGGTCTATaattctgtaataaaaataagcttctGTTTCATAAACTGATAACAGCTTAACAATATTTACCTCAGCCTACCTTTTGTTTGCTATTATATTCCATTATAATCGTCATCGTGCATCAATCTGTTTCTAGCTAGAAATAGATCGAGATACGTTGTTTTGCAGATGCTctctgctgtttaatatttagcacaaaaacataaatctcgtaacaaaattacaattttgaataatatttatgttctgtAAATGCATTGTCTGCTGGTTTATTTGGCTACTTTTCAGTACACCAACATCTTAACCCGGATTTTGTCTAAACTAAGGTTTTTAAGCAGTCATTACttattctttattgttttgttttgttttagttgtcACTGCTAAAAATTAGTAGTTGTTTGCACTATTCAGACGACTAATTGCCTGCACTGATCAAGTTAAGTAGACATCACTCTGTATTTTACGTTTTTGAAGAGTGATGGGAGGGGCTTTTTGAAGCAGAGATCAGCGGCTTCCTGAAAAAGCAACAATCCAAGTCATCTCTGTAATTGAGCTGGTTCCTGTTTTAGCATCTGTAGAAAGCTTAGATGACAGCCACAGTACGGCAGATACCGAAATCCTTTCACAATCGTCTCAGGAGCGACGAACACAGTGGCCAGAGCAATTTGAAGTCCCAAATTTCTCTTTTGATGTCGGGTATAGACTCAGACAAGCAAATCTGTATCTTAGGGATGGAACACTCCTTAAAGTAACAAAAGATCTTAAAAACGAGGTCCTTGAGATATTGGGAGAGAGTATTGCTTCACAGCATATCCAAACAATGCTCAGTTTGAAAAAGCTGCAGCAGCACTGATAAACAAGCATCCTTGTCTCCAAGAGAAAGGCTCAACCAGTAGCTGCAGTGGTCGGaagaacagtttaaaatataacatggCTAATTACAGGTCAAAGCTCAGACAGTCGGGGTGTTGCAGTGATGTTGCAGTAAATTCTGGTAAGTGTGGAGGGCATTCAAGTCCAGGAGAATcagctaacaaaaatattaatgcaaaaaaaggcGAGCTCAACTTCTTACCCAACTTTCCAGATGGATTCGATTTGAACAGGCCTTGAGGATGCCCGCAAGATCTTGGTCGATGAAATGCAGAAACGAACACCAAATGGACAACttgtgaaagagaaaatggaacTTACATTTGCACTAAGAAGAAGAGAAGTGATGGAGACCGAGCCTGCCATAAGTCAGATGGTGGAGCGCTGGCCTTCCCTTTTTACGGAGGATCAGGTGTTCATGGAGTTTAACAGGATTGTGGGAAAGAACCTCAAGCATGAATTCTATGAAAGCATTGATCAACACAGTCTTCATCTAATTGAGATCTTTCGATCTAAGAGAGGGAATGTCGGACAGCTGTTGACACAGCTTTTAAAACAATCCAAGGTTGGTCCATTGTACacttgtattatataaaaaaaaacaatcctccTTGTTGAGCATGAAGGTGCTGTGACTCCATCTTCTCTGCATCTCAGTCCAGCCTCATTCAAGATTGTCATTGAGGGAGAAGTTGTGATGGAAAGCATTAAAGACTTGTCAAAAGCAATGTGTATTCTTTTTGGACTTACATATGCACTGCATCTTAACTACCCCAAATCGATGAAGAACACATTCCAATTCATCCAACAAGTACTTCTCACGTTCGGGCACACTGACTTAAAGCCCAAGTtacaagcattaaaaaaaatagcttgcaATTTAATCTTGACAGGAATGGCCGTTGTTCTTGTATTGTTCTTGAGTTGCACAATTAATCTCTGAAGAGATTATCTTGTTCAAAATGTCATGTCATTGCAGTAAGTGATGTAAAGtttaacagtgttttgtgtttaaaattcaaAGTGGTTATCCTTAAGCTTTAGAGACTTGATTAAAACTCGAGTTTTAATGCTTATCCAGTCTAGTCATTCAGAAGGATATGGCATATTGTTGAATACTATGTGTTCCTGTTACTGTAAGCCATTTGCACAGGTGTTAACAAACAACATCGTGTTACCTGTTTTTATgagcaataaaaacattgaaatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158854 lncRNA upstream 193615 17832072 ~ 17860653 (+) False G107558
XR_006252612.1 lncRNA upstream 194464 17857907 ~ 17859804 (+) False LOC122358482
XR_006252613.1 lncRNA upstream 194470 17858900 ~ 17859798 (+) True LOC122358482
TU158846 lncRNA upstream 216410 17832072 ~ 17837858 (+) False G107558
TU158850 lncRNA upstream 216410 17832072 ~ 17837858 (+) False G107558
XR_006252642.1 lncRNA downstream 370463 18442695 ~ 18443413 (+) True LOC122358786
TU159041 lncRNA downstream 453373 18525605 ~ 18526233 (+) True G107688
TU159042 lncRNA downstream 461317 18533549 ~ 18534339 (+) True G107689
TU159046 lncRNA downstream 487248 18559480 ~ 18559755 (+) True G107693
TU159080 lncRNA downstream 598098 18670330 ~ 18675897 (+) True G107713
XM_043258537.1 mRNA upstream 14969 18037113 ~ 18039299 (+) True LOC122358680
XM_043258283.1 mRNA upstream 243500 17789845 ~ 17810768 (+) False trim3a
XM_043258285.1 mRNA upstream 243500 17798086 ~ 17810768 (+) True trim3a
XM_043258150.1 mRNA upstream 266399 17778597 ~ 17787869 (+) True fhdc4
XM_043259959.1 mRNA upstream 276715 17769225 ~ 17777553 (+) False arfip2a
XM_043259084.1 mRNA downstream 149040 18221272 ~ 18237305 (+) True trpc4b
XM_043259085.1 mRNA downstream 168417 18240649 ~ 18254051 (+) True postnb
XM_043259086.1 mRNA downstream 168418 18240650 ~ 18254051 (+) False postnb
XM_043259182.1 mRNA downstream 197804 18270036 ~ 18283210 (+) True spartb
XM_043259183.1 mRNA downstream 197804 18270036 ~ 18283210 (+) False spartb
TU158878 other upstream 7364 18045017 ~ 18046904 (+) True G107574
TU158879 other upstream 8234 18045017 ~ 18046034 (+) False G107574
TU158847 other upstream 193615 17859911 ~ 17860653 (+) False G107558
TU158422 other upstream 1540108 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 1817927 16089757 ~ 16236341 (+) True G107148
TU159142 other downstream 684111 18756343 ~ 18758836 (+) True G107756
TU159144 other downstream 687350 18759582 ~ 18760497 (+) True G107757
TU159161 other downstream 721848 18794080 ~ 18795982 (+) True si:dkey-30e9.6
TU159167 other downstream 770044 18842276 ~ 18843855 (+) True G107777
XR_006252666.1 other downstream 921113 18993345 ~ 18995960 (+) True LOC122358990

Expression Profile