RNA id: TU159041


Basic Information

Item Value
RNA id TU159041
length 563
lncRNA type inter_gene
GC content 0.68
exon number 2
gene id G107688
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 18525605 ~ 18526233 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaacccagcccatcatctccccgcgtCGCGGAGGCCAGGCCTGTGCCCACGGAGGGCGCAATCGCTGAGCCGGGGacgaccacggaaccatcgctgaggagagcgacagagccgtggagcgccaccggacccgagccgattgcgacagaccaggtgcgtgagcgggCATCAGAGCttgccgcggtggagacagccgacagcgagagcgcggagtggagctccgcccactgcagatcggctgaggatgagctgatcatccaactggggctgctggatctacaagaggaactggatgatgtgaacttagactgggcacctcccgtGTATCCTGAgtcgctggtcccgcccagccgtcctgttagcccgctggtcccgcccagccgtcctgttagcccgctggtcccgcccagccgtcctgttagcccgctggtccgcccagccgtcctgttagcccgctggtcccgcccagccgtcctgttagcccgctggtcccgcccagccgtcctgttagcacCCTAGAGACCGTTccccgagcgctcccccgagttccagtgcccgcgccc

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252642.1 lncRNA upstream 82192 18442695 ~ 18443413 (+) True LOC122358786
XR_006252610.1 lncRNA upstream 453373 18054268 ~ 18072232 (+) True LOC122358481
XR_006252611.1 lncRNA upstream 453373 18060952 ~ 18072232 (+) False LOC122358481
TU158859 lncRNA upstream 458487 18054268 ~ 18067118 (+) False LOC122358481
TU158857 lncRNA upstream 458730 18060989 ~ 18066875 (+) False LOC122358481
TU159042 lncRNA downstream 7316 18533549 ~ 18534339 (+) True G107689
TU159046 lncRNA downstream 33247 18559480 ~ 18559755 (+) True G107693
TU159080 lncRNA downstream 144097 18670330 ~ 18675897 (+) True G107713
TU159138 lncRNA downstream 218373 18744606 ~ 18747021 (+) True G107752
XR_006252624.1 lncRNA downstream 282025 18808258 ~ 18835601 (+) True LOC122358548
XM_043258673.1 mRNA upstream 128897 18388927 ~ 18396708 (+) True mab21l1
XM_043258670.1 mRNA upstream 208426 18284964 ~ 18317179 (+) False dclk1b
XM_043258671.1 mRNA upstream 210069 18284959 ~ 18315536 (+) True dclk1b
XM_043258445.1 mRNA downstream 186232 18712465 ~ 18720857 (+) True inpp5ka
XM_043258446.1 mRNA downstream 186232 18712465 ~ 18720857 (+) False inpp5ka
XM_043258444.1 mRNA downstream 186232 18712465 ~ 18720857 (+) False inpp5ka
XM_043258447.1 mRNA downstream 186232 18712465 ~ 18720857 (+) False inpp5ka
XM_043258450.1 mRNA downstream 195056 18721289 ~ 18724358 (+) True tekt1
TU158844 other upstream 408652 17832072 ~ 18116953 (+) True G107558
TU158878 other upstream 478701 18045017 ~ 18046904 (+) True G107574
TU158879 other upstream 479571 18045017 ~ 18046034 (+) False G107574
TU158847 other upstream 664952 17859911 ~ 17860653 (+) False G107558
TU158422 other upstream 2011445 16513320 ~ 16514160 (+) False lyrm9
TU159142 other downstream 230110 18756343 ~ 18758836 (+) True G107756
TU159144 other downstream 233349 18759582 ~ 18760497 (+) True G107757
TU159161 other downstream 267847 18794080 ~ 18795982 (+) True si:dkey-30e9.6
TU159167 other downstream 316043 18842276 ~ 18843855 (+) True G107777
XR_006252666.1 other downstream 467112 18993345 ~ 18995960 (+) True LOC122358990

Expression Profile