RNA id: TU159080


Basic Information

Item Value
RNA id TU159080
length 1419
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G107713
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 18670330 ~ 18675897 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttttactaTTCTCATTTTGACGTTAGTTTTGTCTTAGCTTATATCTAAAAGTATTGTAATGATGGGtagaaaaaatgaattacatataataatgttctattaaacataaacattaatgCATGTCAGATGAATGCATATACATGGAAATGTACAGCTGCCTTTATATTTTAGACAGTTTAATCATAACATTGAGGTCTTTTcccattaaaacatttgaaacaccCTGGCTAAATGAACACATTGCCAATAacaaatatgcaatttatttatacagaataTTTTATTGGTTCAGCAGACTGAAAAAAACGGATTTGGATGGTGGGGGGAGAATCTTCAATTGTTTCCCAACGCAGCCAATATTAAAAACCAATGCTCTGTACCACATCCTCCCCGTTTCAAACACTGATAAAATCAATACTGGGctgtaaaatgtaacaaatacgTGAATTTATCATCAGACCAGTGTTTCTTTTATCTGCAGAGGCACATTTGCACATGCACAACCATATGCACACAAGAATTACACAAATGAgaagggttaaaaaaaaggaaaggataAAATGAcgTGGCTTTCCTAGCTGCTGTCTGTGACTTTGGAGGTCGTCCTCTCCTCTTCTGAGGTGTGGACTCCACTGAATCGCTGGCGGTATCTGCCTCCCCTCTGCCATAACCTTGGTTTACGTCCTCTTCTGCCTTTTGGCTTCGCTTCCATATTCTCACTGCCTGCGTCATCTTCAtcgtcctcctcttcctcttgctCATCCTCATTTTCTTCATCTGCAGGTGGAGCAGTCTTCCTGCGACCCCTCCTGCCCTTGCTGGGCGCCTCGTCCTTCGAGGCTGCCGATTTTGGGGGCCTTCCTCGCCGGCCTTTCTTGGGCGGGCTGTTCTGTTCGTCTTCGGTCTCCATGGAGGCCTCTGCCAGGCTGCTGTCTTCGCCCCACTGGTCCTCGGCATCGTCAGTGCTCGTGTTGGCAGCTTTCTTCCGGCCCCTCTTGGGCTTGGACTCCTGAACCTTGTCGTCCTGATTGGCTGCAGTACCCCGCTTTCGCCCCCTGCTGGGCTTTTCTGTCTCGGATGGGCTCTTCATTGAAATGTCTTCATTCTCGCTGTGGTCCACATCAGCAGAGTCAAGCCTCCTTTACTGCGGCCAGGAGAGCTGGGGTTGGAGTTACTGCTGGCATTGCTGATGGTCTCCATGCGTGAGAGTTTGGTCTGCAGTTTTCCTGTGGCGGACAGGGGCTTGTTCACAGCACCCAGCACGTTTGCTGCCTTAGGCTGCAGAGAGAATCAGGCAGTCAATCCCACAGTCCTGTCGGACCCAAGAAGGTTAAAAAGACAGAACAGAGGACAAATGCGTACCTTTCCTGGGGTAAAGAATGACTTCATCTCAGGAGGCAGGTAGTTTTTCGTGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159046 lncRNA upstream 110575 18559480 ~ 18559755 (+) True G107693
TU159042 lncRNA upstream 135991 18533549 ~ 18534339 (+) True G107689
TU159041 lncRNA upstream 144097 18525605 ~ 18526233 (+) True G107688
XR_006252642.1 lncRNA upstream 226917 18442695 ~ 18443413 (+) True LOC122358786
XR_006252611.1 lncRNA upstream 598098 18060952 ~ 18072232 (+) False LOC122358481
TU159138 lncRNA downstream 68709 18744606 ~ 18747021 (+) True G107752
XR_006252624.1 lncRNA downstream 132361 18808258 ~ 18835601 (+) True LOC122358548
TU159163 lncRNA downstream 136625 18812522 ~ 18838720 (+) True G107774
TU159310 lncRNA downstream 269376 18945273 ~ 18945552 (+) True G107870
TU159311 lncRNA downstream 270640 18946537 ~ 18946881 (+) True G107871
XM_043258673.1 mRNA upstream 273622 18388927 ~ 18396708 (+) True mab21l1
XM_043258670.1 mRNA upstream 353151 18284964 ~ 18317179 (+) False dclk1b
XM_043258671.1 mRNA upstream 354794 18284959 ~ 18315536 (+) True dclk1b
XM_043258445.1 mRNA downstream 36568 18712465 ~ 18720857 (+) True inpp5ka
XM_043258446.1 mRNA downstream 36568 18712465 ~ 18720857 (+) False inpp5ka
XM_043258444.1 mRNA downstream 36568 18712465 ~ 18720857 (+) False inpp5ka
XM_043258447.1 mRNA downstream 36568 18712465 ~ 18720857 (+) False inpp5ka
XM_043258450.1 mRNA downstream 45392 18721289 ~ 18724358 (+) True tekt1
TU158844 other upstream 553377 17832072 ~ 18116953 (+) True G107558
TU158878 other upstream 623426 18045017 ~ 18046904 (+) True G107574
TU158879 other upstream 624296 18045017 ~ 18046034 (+) False G107574
TU158847 other upstream 809677 17859911 ~ 17860653 (+) False G107558
TU158422 other upstream 2156170 16513320 ~ 16514160 (+) False lyrm9
TU159142 other downstream 80446 18756343 ~ 18758836 (+) True G107756
TU159144 other downstream 83685 18759582 ~ 18760497 (+) True G107757
TU159161 other downstream 118183 18794080 ~ 18795982 (+) True si:dkey-30e9.6
TU159167 other downstream 166379 18842276 ~ 18843855 (+) True G107777
XR_006252666.1 other downstream 317448 18993345 ~ 18995960 (+) True LOC122358990

Expression Profile