RNA id: TU159138


Basic Information

Item Value
RNA id TU159138
length 2381
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G107752
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 18744606 ~ 18747021 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTACTGCGTTTTAAAAttcttactgacaaatgggcCAAACCTAGAATAGacgcacattttaaaaatgtacaaatattgaTTAGTTTATGAAGCGAAAGCAAGtagtttttgatttattttgttgtaaatacgCCTGTCGAAACTGTTGTACTGAATGACATTTCAGTGGGTGTTTTCTGTAAATCGGGGGGAAATGCAtcgtgtttattttttgctcagaaaatTGCAActaaatcaaaaagaaaacttttttgcttttttttgagCAATCTAGTGCCGCTTCTCGTACTTCCTAATGTTTTGGACACTTTGTGCAGCCTGTAGATTTGTATTTGCTTCAGGCAATACCTTGAACTGCTGGCAGAGTGTGCTGAACCGCAACCAACTCGAATTCCCTCTCCAACAAGCCGTTGCCGTTCTTCCCTCACAAACAAGGGGGCGTTCTCTCACAGCACATCAACTCAGCTTCTCTTCTGATTTGTCTTAAAACAACGGCAAAGAAATTACATCAGTATCAAGAAGCAACATTAGCTCTCTTAACCCACACAGGCGCACTTTCTCCGACagacgcacgcacgcacgccgTACAGGGCCGCAGTGTGTGGGAGAGGAGAATTGCTCATTATGAGTGCACGACGTCAACCCTTGCGTGTTTGGCGCGCATACAGAAAGCACTGTTCATGATATGACACATCATTCACGGCGCACTCGTCCACGCTCACACCGCGTCACCCAGCTGCCTCTGTTGACTTTATTCACGCGCGCGTCAGcggtgcgtgcgcgcgcgcccGCGCGTCTCCTGAACACTTCAGAGCAGACGGGGACTACAGATGGTGGCTGATAAATGGATTGTTCTTGAAATCTCCAAGATTATTATATTAGAAAGATTCCCATGGTAGCTCACGAGTTTGACGCAGTTATTGAACCAATGAACTGTACGAGATGACAGAGGACTGTTAATCCAATTTTTATAGGTATACTTTTAGGTCTTTAggactaagaaaaaaaaatatatatatatatatatatataaactgtcaACAttgttaattgaaatgaaatgaacagTGCCAAATAGTCTGCCTTCTTATTTCTTATgtagcatattaaatatattatttcggTAGGCCTACTATTAAAGCAGGGTTATGTCACCTTATAAAtacattctgttttcatttttacttccattgcatggacaaaaacagacattatttaaaattactttgaggaaaaaaaaaatactcagaTGTTTGGAACAGTCCATAAtgataattattcatattttgaccAAACTATTGGTTTGATAATTTATTTACCACAATGCAACCAGttcattaaaagtaaattcattCATAAAATCCCTAAATAATGTTCAATCAGTCACCATAATGgtgatttaaaacataaaataactacttactaataattattataccGATATTTAGAgcaattacagcattttttgaTATGACagaaacaaatacagtaaatcTAAATCTGCGATAAAAATGCAGCCAGGCTTTATTTtctgtatgtaaaaaaatgtatttggcacacacaaataataatgcattttcttaCACTGACTGTTGAATGCTATCAATCCTGtcaatattttacagtgtatatcGCAACAACTGAAGCCTTCCGGAAATGTCTCATTAAACAAACATCCCGAGCAGCCTTTTTATTCTTGTTAATCATAACCGAATAATTATAATGACACCAGCTGTTCCAGAAAAACAGAACTAATTTATATGCCCATCACACAAGATCTAAGAGGCAGCAAACTGCTGTTGCTTGGAACAGAAACCCCTGGCAGCACGCGTTAAAAAGGATGAAGCAATTCCCAAGCCAAACAAACGGACCATTCATGCTCCACAAACAAGCCTTGAACCATCCAGGACACTTGCCTCATACCAGATCCAGATTCCACTCTTGAGCTCTCCTGAAGGGGAAGGACTGGTTTCTCGGCTCCTGCTCTGGTTCTTCAAAGTCCTCCTGTTCTTCGTCCTTCTTCAGAGGTGCGggaatggggggaaaaaaagacaaagagggAGGGAGACGGAGATAGACAGATAGGGAGAGGAGAGGATGGAGACTTTTAGCTATAAGCTGGGCAAATGTGTGCCGTGGGCAGCCTTGAATATGCAGACATTTCCCTCAGTGCATTCTTCTTCTGTAGCCCACATCGTACATTCCTCTCCATGTCTGTCCCTTACTACCCCGGTCAAACCGTCTAATTTCAGCCCGTCCGGGTAACACCGTTCCTCGCGGTTTTTAGGTATATTTCTGCTAGGGGTCAGGTGATACCGTTGTGAAAGAGTTTGGACTGGTTTCAGCTTCATCTAGGCTACTCTGTATCCTGGTAAATCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159080 lncRNA upstream 68709 18670330 ~ 18675897 (+) True G107713
TU159046 lncRNA upstream 184851 18559480 ~ 18559755 (+) True G107693
TU159042 lncRNA upstream 210267 18533549 ~ 18534339 (+) True G107689
TU159041 lncRNA upstream 218373 18525605 ~ 18526233 (+) True G107688
XR_006252642.1 lncRNA upstream 301193 18442695 ~ 18443413 (+) True LOC122358786
XR_006252624.1 lncRNA downstream 61237 18808258 ~ 18835601 (+) True LOC122358548
TU159163 lncRNA downstream 65501 18812522 ~ 18838720 (+) True G107774
TU159310 lncRNA downstream 198252 18945273 ~ 18945552 (+) True G107870
TU159311 lncRNA downstream 199516 18946537 ~ 18946881 (+) True G107871
TU159312 lncRNA downstream 200026 18947047 ~ 18947385 (+) True G107872
XM_043258452.1 mRNA upstream 10368 18727691 ~ 18734238 (+) True LOC122358576
XM_043258453.1 mRNA upstream 17050 18724523 ~ 18727556 (+) True LOC122358577
XM_043258451.1 mRNA upstream 20245 18721310 ~ 18724361 (+) False tekt1
XM_043258450.1 mRNA upstream 20248 18721289 ~ 18724358 (+) True tekt1
XM_043258445.1 mRNA upstream 23749 18712465 ~ 18720857 (+) True inpp5ka
XM_043259866.1 mRNA downstream 19831 18766852 ~ 18770394 (+) True tmem106ba
XM_043259867.1 mRNA downstream 19832 18766853 ~ 18770394 (+) False tmem106ba
XM_043258153.1 mRNA downstream 25237 18772258 ~ 18774650 (+) True vwde
XM_043259952.1 mRNA downstream 47104 18794125 ~ 18795862 (+) False si:dkey-30e9.6
XM_043259953.1 mRNA downstream 50418 18797439 ~ 18798324 (+) True arl4aa
TU158844 other upstream 627653 17832072 ~ 18116953 (+) True G107558
TU158878 other upstream 697702 18045017 ~ 18046904 (+) True G107574
TU158879 other upstream 698572 18045017 ~ 18046034 (+) False G107574
TU158847 other upstream 883953 17859911 ~ 17860653 (+) False G107558
TU158422 other upstream 2230446 16513320 ~ 16514160 (+) False lyrm9
TU159142 other downstream 9322 18756343 ~ 18758836 (+) True G107756
TU159144 other downstream 12561 18759582 ~ 18760497 (+) True G107757
TU159161 other downstream 47059 18794080 ~ 18795982 (+) True si:dkey-30e9.6
TU159167 other downstream 95255 18842276 ~ 18843855 (+) True G107777
XR_006252666.1 other downstream 246324 18993345 ~ 18995960 (+) True LOC122358990

Expression Profile