RNA id: TU159163


Basic Information

Item Value
RNA id TU159163
length 1740
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G107774
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 18812522 ~ 18838720 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgttttttttttttttttttttTTGTATTTCAACACTATTTTATTACAGAAGTGTAGCTATTGCCATTCCCTTCgcaattatgtatatattttttacattcaataaacactgacgttttttttttccaatgtaaaaaagaaaagaaataatgaaCGTACTGCAGGGCATAGCTGCCGTCTGATCATATGTGACTAGATTTACACGAAAAGCAGCATTGAGGTGCATTAACCTGaatatacatgttttatattttcagtgatGGCATGGGGAGCGAGTAATGGACCAAcatccacttttttttcttaataaaaaagcaatttgtCACTCTAATagtagaaatgtagcattaaaagAATGATGTTCTGATCAAAAAGTCATATTCAGTGAAATACGGtgttaaatatactgtattgtTGCTTTAAATAGATTTTCGAAAATTAGTACTTGAAACACCATGTACTGTAGTATTACAAAATCATGCTGtcatgggatttttttttgtctttaattcaTTAAGAAAAAATCTGCTGTTCATTGAGAAAATTACCTGCATCTTCCCTCCTGTAAGATATTATATTCATaggagaatatatatatataggggtATAACTTGAATATTAGCGTTTCACAAGTAACATGAATCAGTCGTTTCTTGTAATTAATGTGCTAGTAATTAATCACTGTATTGGTCCTGAACGTGCGAGAAAGGATGTATAAGGGCCATTTACTCAGTTCAGATATGTGCTCACTTTGAGATGGATTTTTAAGGATTTTATTTCCATAGTAATACACTGTATTATTTACTCAGTTTGACACCAAGGGAGAGAAAACAAATGCTGTGAAAATGGGTGAAAATAACAAAGCGCTCCATGAACAATCCAAGAGTTTCAATGGTAAAAGAGGTTGGGATTTTTCTACTCACGTGCTCCAGACTCTAACCTGTCTAAATAGTTCAAAACAGCTGTCCGAAGAGAGGCCATTGGCCCTCAAGAGTCTTTCGCTGTGAGAAAACGGCATGCTGAAACACCCCTTCCCCTTCAatagcaacaaaaaaacaccaaaggAGCATCTAACGTAACTACACCAGTACGTTTGTAGGTTTACACACTGCCATCATCCTCTGTCCATAAAGTGCTCTCTTTTGTCCTGGGGAATGACTGAAGGAAATGAGGGACAAGTCTGAATGTTCTTCGTTTTGTTTTGCGAATGGCCCGTAGCAGATTTCAGTAGACGTAGCCCTCGTTGTACGGGTGCGGGTTGCAGTAGCCGCCCTCTTGAATGTACGCCATGTTCTCATCGAAGTGTGACAGCGGCACGGTGTCTTCCTCGTTGATCTGCCGCTCCAGGTCGGTCTTCAGCACCGGACGCTGATTGTCAGGGAAGGCCATGGAGAACAAAGCCTCGGGGTCGCAGACAAACTTATACACGTATCTTTCGCCTGCCACCTTTGAGTCAAGAAACCATAATATTACTATACATATTACTATTCATTTCAcaacattaaaattcatttcacttgcattaaaaaagttttttcgaAAGTCTTTTAACGTGTCATGTTACGCAAAATGGCGTTACGGCGACGCAAAGGAGAATAATTGGTGAatagagatattttttttctttgcgcacaaaaagtattttcgtaGATTCATAAAATTACgcttgaaccactgatgtcacctGGACTATTTAAACACTTTAGAGTCGttcagtgtgaaaaaaaatatgacattttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159138 lncRNA upstream 65501 18744606 ~ 18747021 (+) True G107752
TU159080 lncRNA upstream 136625 18670330 ~ 18675897 (+) True G107713
TU159046 lncRNA upstream 252767 18559480 ~ 18559755 (+) True G107693
TU159042 lncRNA upstream 278183 18533549 ~ 18534339 (+) True G107689
TU159041 lncRNA upstream 286289 18525605 ~ 18526233 (+) True G107688
TU159310 lncRNA downstream 106553 18945273 ~ 18945552 (+) True G107870
TU159311 lncRNA downstream 107817 18946537 ~ 18946881 (+) True G107871
TU159312 lncRNA downstream 108327 18947047 ~ 18947385 (+) True G107872
TU159313 lncRNA downstream 108998 18947718 ~ 18948058 (+) True G107873
TU159314 lncRNA downstream 109675 18948395 ~ 18948615 (+) True G107874
XM_043259953.1 mRNA upstream 14198 18797439 ~ 18798324 (+) True arl4aa
XM_043259952.1 mRNA upstream 16660 18794125 ~ 18795862 (+) False si:dkey-30e9.6
XM_043258153.1 mRNA upstream 37872 18772258 ~ 18774650 (+) True vwde
XM_043259866.1 mRNA upstream 42128 18766852 ~ 18770394 (+) True tmem106ba
XM_043259015.1 mRNA downstream 154625 18993345 ~ 18995991 (+) False LOC122358990
XM_043259921.1 mRNA downstream 163953 19002673 ~ 19005341 (+) True tspan13a
XM_043258348.1 mRNA downstream 197255 19035975 ~ 19040881 (+) True lta
XM_043258349.1 mRNA downstream 197255 19035975 ~ 19040881 (+) False lta
XM_043258201.1 mRNA downstream 207763 19046483 ~ 19048861 (+) True tnfb
TU159161 other upstream 16540 18794080 ~ 18795982 (+) True si:dkey-30e9.6
TU159144 other upstream 52025 18759582 ~ 18760497 (+) True G107757
TU159142 other upstream 53686 18756343 ~ 18758836 (+) True G107756
TU158878 other upstream 765618 18045017 ~ 18046904 (+) True G107574
TU159167 other downstream 3556 18842276 ~ 18843855 (+) True G107777
XR_006252666.1 other downstream 154625 18993345 ~ 18995960 (+) True LOC122358990
XR_006252667.1 other downstream 154625 18993345 ~ 18995960 (+) False LOC122358990
unassigned_transcript_2152 other downstream 586397 19425117 ~ 19425189 (+) True trnav-aac_27
TU159761 other downstream 882564 19721284 ~ 19774385 (+) True si:dkey-262k9.2

Expression Profile