RNA id: TU159311


Basic Information

Item Value
RNA id TU159311
length 345
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G107871
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 18946537 ~ 18946881 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAAATATGAGATGGAAAACGGTCATCCAGTCTGGGTTTGGactttttcaatttcaattgaTTTTCGCGCATCCACAATTTTCTTCTTATTGCACCCAGGACTGCTGTACATATGTTTCTGTTGTTGATGCAATTTAAAGCACTTACTATCAACTGTACATTTCACTGAGTAAGATGTGGAGTTGATTTTGTGGATGCACAGTTACAGCTCTGAAATATTTGATGTGCTGTCAGAATCTCAAAAACATCTGTTGGACAGTTCTGCCACACTGACATGATTCTCATAATCACGCCGTCCCAAAGAAGTCAAGTCTTTCATGGGTTTTTTGTCCAGTTAAAATCTcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159310 lncRNA upstream 985 18945273 ~ 18945552 (+) True G107870
TU159163 lncRNA upstream 107817 18812522 ~ 18838720 (+) True G107774
XR_006252624.1 lncRNA upstream 110936 18808258 ~ 18835601 (+) True LOC122358548
TU159138 lncRNA upstream 199516 18744606 ~ 18747021 (+) True G107752
TU159080 lncRNA upstream 270640 18670330 ~ 18675897 (+) True G107713
TU159312 lncRNA downstream 166 18947047 ~ 18947385 (+) True G107872
TU159313 lncRNA downstream 837 18947718 ~ 18948058 (+) True G107873
TU159314 lncRNA downstream 1514 18948395 ~ 18948615 (+) True G107874
TU159305 lncRNA downstream 9939 18956820 ~ 18958775 (+) True G107866
TU159501 lncRNA downstream 225006 19171887 ~ 19221052 (+) True G107996
XM_043259953.1 mRNA upstream 148213 18797439 ~ 18798324 (+) True arl4aa
XM_043259952.1 mRNA upstream 150675 18794125 ~ 18795862 (+) False si:dkey-30e9.6
XM_043258153.1 mRNA upstream 171887 18772258 ~ 18774650 (+) True vwde
XM_043259866.1 mRNA upstream 176143 18766852 ~ 18770394 (+) True tmem106ba
XM_043259015.1 mRNA downstream 46464 18993345 ~ 18995991 (+) False LOC122358990
XM_043259921.1 mRNA downstream 55792 19002673 ~ 19005341 (+) True tspan13a
XM_043258348.1 mRNA downstream 89094 19035975 ~ 19040881 (+) True lta
XM_043258349.1 mRNA downstream 89094 19035975 ~ 19040881 (+) False lta
XM_043258201.1 mRNA downstream 99602 19046483 ~ 19048861 (+) True tnfb
TU159167 other upstream 102682 18842276 ~ 18843855 (+) True G107777
TU159161 other upstream 150555 18794080 ~ 18795982 (+) True si:dkey-30e9.6
TU159144 other upstream 186040 18759582 ~ 18760497 (+) True G107757
TU159142 other upstream 187701 18756343 ~ 18758836 (+) True G107756
TU158879 other upstream 900503 18045017 ~ 18046034 (+) False G107574
XR_006252666.1 other downstream 46464 18993345 ~ 18995960 (+) True LOC122358990
XR_006252667.1 other downstream 46464 18993345 ~ 18995960 (+) False LOC122358990
unassigned_transcript_2152 other downstream 478236 19425117 ~ 19425189 (+) True trnav-aac_27
TU159761 other downstream 774403 19721284 ~ 19774385 (+) True si:dkey-262k9.2
TU159763 other downstream 796490 19743371 ~ 19774385 (+) False si:dkey-262k9.2

Expression Profile