RNA id: TU159835


Basic Information

Item Value
RNA id TU159835
length 295
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G108207
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 19914149 ~ 19914443 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgcataaaaatattttgtgtttgcgtgtgtgtacAAGTTATTCAGTGTTTGCTCAGCACTGAATAAACACATGTTATAGAAATGTCAAGGGAAGCAGGCAGTAAATACTGAGAGAGAACTTCAGCGCTCTTGGTTTAACTAGACACCAGGTGCACCACTGCTTAACAACATAAAACGGcacagaaatgagaaaaatatgctGCATTATACCACATGATATACCAGAGACTTGTAACATTATACAACATAAGAGCTAATCAATGTCAGTCTGTAAAGAGTTGGTGATATATAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159771 lncRNA upstream 178254 19731418 ~ 19735895 (+) True G108155
TU159770 lncRNA upstream 178915 19730739 ~ 19735234 (+) True G108154
TU159737 lncRNA upstream 224198 19689163 ~ 19689951 (+) True G108124
TU159627 lncRNA upstream 378302 19488226 ~ 19535847 (+) True G108055
TU159632 lncRNA upstream 396675 19514981 ~ 19517474 (+) False G108058
TU159839 lncRNA downstream 84171 19998614 ~ 20055894 (+) True G108211
TU159846 lncRNA downstream 100370 20014813 ~ 20016629 (+) True G108217
TU159874 lncRNA downstream 227362 20141805 ~ 20142372 (+) True G108231
TU159884 lncRNA downstream 256326 20170769 ~ 20233185 (+) True G108240
XR_006252691.1 lncRNA downstream 293727 20208170 ~ 20208659 (+) False LOC122359185
XM_043258130.1 mRNA upstream 139773 19747592 ~ 19774376 (+) False si:dkey-262k9.2
XM_043258127.1 mRNA upstream 139773 19752103 ~ 19774376 (+) False si:dkey-262k9.2
XM_043258128.1 mRNA upstream 139773 19756571 ~ 19774376 (+) False si:dkey-262k9.2
XM_043258129.1 mRNA upstream 139773 19756617 ~ 19774376 (+) False si:dkey-262k9.2
XM_043258352.1 mRNA upstream 264443 19645509 ~ 19649706 (+) True gmnc
XM_043258789.1 mRNA downstream 41545 19955988 ~ 19997163 (+) True kirrel3l
XM_043259928.1 mRNA downstream 112928 20027371 ~ 20074259 (+) True aplp1
XM_043259929.1 mRNA downstream 112928 20027371 ~ 20074259 (+) False aplp1
XM_043259936.1 mRNA downstream 160209 20074652 ~ 20086581 (+) False LOC122359578
XM_043259935.1 mRNA downstream 160209 20074652 ~ 20086581 (+) False LOC122359578
TU159761 other upstream 139764 19721284 ~ 19774385 (+) True si:dkey-262k9.2
TU159763 other upstream 139764 19743371 ~ 19774385 (+) False si:dkey-262k9.2
unassigned_transcript_2152 other upstream 488960 19425117 ~ 19425189 (+) True trnav-aac_27
XR_006252666.1 other upstream 918189 18993345 ~ 18995960 (+) True LOC122358990
XR_006252667.1 other upstream 918189 18993345 ~ 18995960 (+) False LOC122358990
TU159893 other downstream 269677 20184120 ~ 20186861 (+) False G108245
TU159895 other downstream 269677 20184120 ~ 20249972 (+) False G108245
TU159862 other downstream 274590 20189033 ~ 20191454 (+) False G108230
TU159863 other downstream 274590 20189033 ~ 20253742 (+) False G108230
TU159872 other downstream 274590 20189033 ~ 20254271 (+) True G108230

Expression Profile