RNA id: TU159862


Basic Information

Item Value
RNA id TU159862
length 1765
RNA type TUCP
GC content 0.39
exon number 3
gene id G108230
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20189033 ~ 20254271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGGGCGGTGTTTTCCTCAAGCTATTTAAACCTCCGACTAACCTGGACAGCAACAATTTTCCTTCTTTCTGTTGCGTAACAGGATAACCCCTAACATAATAACCAACCAGTCATACGCTCTGTGTTTTCTgaagcagttttatttattcggtggttatttttttttttacattcatcgCAGAAGAATGGACTTCGACTTGCCTCCTTCTCTTCCGGTGAGCGGTATCCCATGGGAAAGGGTTCTCCCACCGTTATTCCCCAGGTGGAACGGGAAAATCGGACCTTATTCATGGACCCCAACCGAACTTCTAATCCCGGTTTCTGAGCACACCGGAGCAGCACAGGTGACCTGTGATCAGAAGGGATTCACTGTGCAGGTTGATGTAAAACACTTCAGTCCCGAGGAACTGCTGGTAAAAGTTACCGAGATTATGTTGTGGTCGAGGAAAACACGAACAAAAAAAGGACGGCTCAGGACTGGTGACACGTCAGTTTAACCGGAGATACAGGATCCCGAACGGAGTGGACATCACGGCCCTGGAATCAGCCATGTCACCAGAAGGCATGCTGGTGATCTCAGCGCCTCTGACACAAGGAGACAATTCCACAATGTTAAATCACAGCGGACCATgatgtgctcacacacacacacttttttttttggctgttctTCACTGTTTTAGTTCTTAACGTGTTAATGCAAGGCGCTTAAAGCTCCCATCCTCTGGGTTTCTCACCTAAAGCAACGGTAAAGACCAAAACAGACTCACTCCCCCTTGTGGCGGTGGGCTGCTCAATTCCAAACATACTTGATTTCAAGCCAACAAGGAAACCGTATCCCATTTTCTTCACACTTGCTGTCAGTTTAGCACACAGCCAGTAAGAGCGACAAATTTGTCCTGAAGTTAACATCCAAACACGAACCCACGGTCCTGAATTTAGTACGAGAAGTTCAGTTCGTTTTGATAGGCTATGTTGagattgtacatattttaaaaaaagcgatAATTTCAGTGTTAATCTTAACATTTGTGTGATGTACAGTTTGAATgtcaataaatgtaatgtaccACCCTTGATTATTTGCAAAGATCTTTATttagaaaactcaaaaaataaatagtagcaaaaataaacatgataagGAGAAACATAGTGCAACGGTAAACAGGTGCATCAAAGCTGCTGGAGCATCTTATCAACCtcactggaaaataaaaatggaaaaccgATCAGGTAAAAAGTCTAACTTGCATAGAATAATTCTACAGATAAGCTGTAGGTATTCTCACCAAAGTTGTTCCTTCACCCATTTCCTCTGCTGTCTGAGGACCTGCAACAAAGGATCGTCTTCAAACTCCTCCCCATCTGAGTCTGTATGTAAGATTGTGATATCAGGATAAGAGGGGaagaataaatcatttatattatttattacacactATCAAATAATTTGGTGttgtttctttacttttttttgcatagaatgatgcattaaacaaataatatattttaaatgcaataaagagATTTTGACAtcgttacatttttattacaaataaatgttcctTTGTacattctattcatcaaaatatcagaCGTTCTGAATTCAGCTTTGATTATCACAGAAACAAAttctatttaacattttatttgaatagaagttattcaaattgtaatttttcacaaaaattataaataatatttcacaataatactgtttttactgtattttgaccaaataaaagCCAAACCAAATCCaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159874 lncRNA upstream 46661 20141805 ~ 20142372 (+) True G108231
TU159839 lncRNA upstream 133139 19998614 ~ 20055894 (+) True G108211
TU159846 lncRNA upstream 172404 20014813 ~ 20016629 (+) True G108217
TU159835 lncRNA upstream 274590 19914149 ~ 19914443 (+) True G108207
TU159771 lncRNA upstream 453138 19731418 ~ 19735895 (+) True G108155
XR_006252691.1 lncRNA downstream 16716 20208170 ~ 20208659 (+) False LOC122359185
TU159916 lncRNA downstream 16716 20208170 ~ 20215479 (+) False LOC122359185
TU159930 lncRNA downstream 47913 20239367 ~ 20294956 (+) False G108257
TU159932 lncRNA downstream 47913 20239367 ~ 20294956 (+) False G108257
TU159934 lncRNA downstream 50561 20242015 ~ 20294956 (+) True G108257
XM_043258937.1 mRNA upstream 2172 20184067 ~ 20186861 (+) True psenen
XM_043258936.1 mRNA upstream 39216 20146188 ~ 20149817 (+) True igflr1
XM_043258933.1 mRNA upstream 47907 20126733 ~ 20141126 (+) False zbtb32
XM_043258934.1 mRNA upstream 47907 20127238 ~ 20141126 (+) True zbtb32
XM_043258229.1 mRNA upstream 82465 20104530 ~ 20106568 (+) True LOC122358429
XM_043259610.1 mRNA downstream 6786 20198240 ~ 20204220 (+) True lin37
XM_043258685.1 mRNA downstream 55724 20247178 ~ 20249733 (+) True LOC122358796
XM_043258684.1 mRNA downstream 60538 20251992 ~ 20253736 (+) True LOC122358795
XM_043258683.1 mRNA downstream 70273 20261727 ~ 20267188 (+) True LOC122358794
XM_043259831.1 mRNA downstream 126092 20317546 ~ 20334995 (+) True LOC122359506
TU159893 other upstream 2172 20184120 ~ 20186861 (+) False G108245
TU159761 other upstream 414648 19721284 ~ 19774385 (+) True si:dkey-262k9.2
TU159763 other upstream 414648 19743371 ~ 19774385 (+) False si:dkey-262k9.2
unassigned_transcript_2152 other upstream 763844 19425117 ~ 19425189 (+) True trnav-aac_27
XR_006252666.1 other upstream 1193073 18993345 ~ 18995960 (+) True LOC122358990
TU159917 other downstream 16716 20208170 ~ 20209326 (+) True LOC122359185
TU159894 other downstream 55748 20247202 ~ 20249972 (+) True G108245
TU160236 other downstream 1020356 21211810 ~ 21214493 (+) True G108431
unassigned_transcript_2153 other downstream 1061288 21252742 ~ 21252815 (+) True trnai-aau_69
unassigned_transcript_2155 other downstream 1062023 21253477 ~ 21253548 (+) True trnaw-cca_2

Expression Profile