RNA id: TU159872


Basic Information

Item Value
RNA id TU159872
length 1796
RNA type TUCP
GC content 0.41
exon number 6
gene id G108230
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20189033 ~ 20254271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGGGCGGTGTTTTCCTCAAGCTATTTAAACCTCCGACTAACCTGGACAGCAACAATTTTCCTTCTTTCTGTTGCGTAACAGGATAACCCCTAACATAATAACCAACCAGTCATACGCTCTGTGTTTTCTgaagcagttttatttattcggtggttatttttttttttacattcatcgCAGAAGAATGGACTTCGACTTGCCTCCTTCTCTTCCGGTGAGCGGTATCCCATGGGAAAGGGTTCTCCCACCGTTATTCCCCAGGTGGAACGGGAAAATCGGACCTTATTCATGGACCCCAACCGAACTTCTAATCCCGGTTTCTGAGCACACCGGAGCAGCACAGGTGACCTGTGATCAGAAGGGATTCACTGTGCAGGTTGATGTAAAACACTTCAGTCCCGAGGAACTGCTGGTAAAAGTTACCGAGATTATGTTGTGGTCGAGGAAAACACGAACAAAAAAAGGACGGCTCAGGACTGGTGACACGTCAGTTTAACCGGAGAGCACACCGGAGCAGCACAGGTGACCTGTGATCAGAAGGGATTCACTGTGCAGGTTGATGTAAAACACTTCAGTCCCGAGGAACTGCTGGTAAAAGTTACCGGAGATTATGTTGTGGTCGAGGGAAAACACGAACAAAAAAAGGACGGCTCAGGACTGGTGACACGTCAGTTTAACCGGAGATACAGGATCCCGAACGGAGTGGACATCACGGCCCTGGAATCAGCCATGTCACCAGAAGGCATGCTGGTGATCTCAGCGCCTCTGACACAAGGAGACAATTCCACAATGTTAAATCACAGCGGACCATgatgtgctcacacacacacacttttttttttggctgttctTCACTGTTTTAGTTCTTAACGTGTTAATGCAAGGCGCTTAAAGCTCCCATCCTCTGGGTTTCTCACCTAAAGCAACGGTAAAGACCAAAACAGACTCACTCCCCCTTGTGGCGGTGGGCTGCTCAATTCCAAACATACTTGATTTCAAGCCAACAAGGAAACCGTATCCCATTTTCTTCACACTTGCTGTCAGTTTAGCACACAGCCAGTAAGAGCGACAAATTTGTCCTGAAGTTAACATCCAAACACGAACCCACGGTCCTGAATTTAGTACGAGAAGTTCAGTTCGTTTTGATAGGCTATGTTGagattgtacatattttaaaaaaagcgatAATTTCAGTGTTAATCTTAACATTTGTGTGATGTACAGTTTGAATgtcaataaatgtaatgtaccACCCTTGATTATTTGCAAAGATCTTTATttagaaaactcaaaaaataaatagtagcaaaaataaacatgataagGAGAAACATAGTGCAACGGTAAACAGGTGCATCAAAGCTGCTGGAGCATCTTATCAACCtcactggaaaataaaaatggaaaaccgATCAGGTAAAAAGTCTAACTTGCATAGAATAATTCTACAGATAAGCTGTAGGTATTCTCACCAAAGTTGTTCCTTCACCCATTTCCTCTGCTGTCTGAGGACCTGCAACAAAGGATCGTCTTCAAACTCCTCCCCATCTGAGTCTGTATGTAAGATTGTGATATCAGGATAAGAGGGGaagaataaatcatttatattatttattacacactATCAAATAATTTGGTGttgtttctttacttttttttgcatagaatgatgcattaaacaaataatatattttaaatgcaataaagagATTTTGACAtcgttacatttttattacaaataaatgttcctTTGTacattctattcatcaaaatatcagaCGTTCTGAATTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159874 lncRNA upstream 46661 20141805 ~ 20142372 (+) True G108231
TU159839 lncRNA upstream 133139 19998614 ~ 20055894 (+) True G108211
TU159846 lncRNA upstream 172404 20014813 ~ 20016629 (+) True G108217
TU159835 lncRNA upstream 274590 19914149 ~ 19914443 (+) True G108207
TU159771 lncRNA upstream 453138 19731418 ~ 19735895 (+) True G108155
TU159926 lncRNA downstream 43117 20297388 ~ 20302209 (+) True G108256
TU160083 lncRNA downstream 66610 20320881 ~ 20321946 (+) True G108337
XR_006252704.1 lncRNA downstream 97326 20351597 ~ 20352384 (+) True LOC122359467
XR_006252695.1 lncRNA downstream 579223 20833494 ~ 20838578 (+) True LOC122359263
TU160196 lncRNA downstream 579399 20833670 ~ 20838566 (+) False LOC122359263
XM_043258937.1 mRNA upstream 2172 20184067 ~ 20186861 (+) True psenen
XM_043258936.1 mRNA upstream 39216 20146188 ~ 20149817 (+) True igflr1
XM_043258933.1 mRNA upstream 47907 20126733 ~ 20141126 (+) False zbtb32
XM_043258934.1 mRNA upstream 47907 20127238 ~ 20141126 (+) True zbtb32
XM_043258229.1 mRNA upstream 82465 20104530 ~ 20106568 (+) True LOC122358429
XM_043258683.1 mRNA downstream 7456 20261727 ~ 20267188 (+) True LOC122358794
XM_043259831.1 mRNA downstream 63275 20317546 ~ 20334995 (+) True LOC122359506
XM_043259833.1 mRNA downstream 63275 20317546 ~ 20334671 (+) False LOC122359506
XM_043259834.1 mRNA downstream 63275 20317546 ~ 20332892 (+) False LOC122359506
XM_043259832.1 mRNA downstream 68691 20322962 ~ 20334995 (+) False LOC122359506
TU159893 other upstream 2172 20184120 ~ 20186861 (+) False G108245
TU159761 other upstream 414648 19721284 ~ 19774385 (+) True si:dkey-262k9.2
TU159763 other upstream 414648 19743371 ~ 19774385 (+) False si:dkey-262k9.2
unassigned_transcript_2152 other upstream 763844 19425117 ~ 19425189 (+) True trnav-aac_27
XR_006252667.1 other upstream 1193073 18993345 ~ 18995960 (+) False LOC122358990
TU160236 other downstream 957539 21211810 ~ 21214493 (+) True G108431
unassigned_transcript_2153 other downstream 998471 21252742 ~ 21252815 (+) True trnai-aau_69
unassigned_transcript_2155 other downstream 999206 21253477 ~ 21253548 (+) True trnaw-cca_2
unassigned_transcript_2157 other downstream 1000663 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160418 other downstream 1470284 21724555 ~ 21726174 (+) False LOC122358705

Expression Profile