RNA id: XR_006252691.1


Basic Information

Item Value
RNA id XR_006252691.1
length 352
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC122359185
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20208170 ~ 20215479 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGAGCAACGAAATGTGAGATCGAGTGTTAATGACCATGTGAGCTTTTGCTGTGTGCTTCGTGGAATCAGTCGGAgagAGCACATATAGGCCACTGCCGTTGTTTTGTACGCCGTTGTTTTGTACGCCGTTTTTCCGTTTTTGTAACCTTGTTTGCACCGGGTAAAATTGAAGGGCCTGTAATCCTGTGAAACCTATTCAGGAAAGTTAAGACCACTGACGTTAATTAGGTGGTTGtctctgtaaatttatttatttttattttctttactttgtctTACCCTGAATTAGACCTTAATGCTGAGTTTCCTTTTAAGCTCAGTCAAGAATAAAAGAACCCTTATTTGTTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159874 lncRNA upstream 65798 20141805 ~ 20142372 (+) True G108231
TU159839 lncRNA upstream 152276 19998614 ~ 20055894 (+) True G108211
TU159846 lncRNA upstream 191541 20014813 ~ 20016629 (+) True G108217
TU159835 lncRNA upstream 293727 19914149 ~ 19914443 (+) True G108207
TU159771 lncRNA upstream 472275 19731418 ~ 19735895 (+) True G108155
TU159930 lncRNA downstream 30708 20239367 ~ 20294956 (+) False G108257
TU159932 lncRNA downstream 30708 20239367 ~ 20294956 (+) False G108257
TU159934 lncRNA downstream 33356 20242015 ~ 20294956 (+) True G108257
TU159926 lncRNA downstream 88729 20297388 ~ 20302209 (+) True G108256
TU160083 lncRNA downstream 112222 20320881 ~ 20321946 (+) True G108337
XM_043259610.1 mRNA upstream 3950 20198240 ~ 20204220 (+) True lin37
XM_043259609.1 mRNA upstream 17401 20188914 ~ 20190769 (+) True hspb6
XM_043258937.1 mRNA upstream 21309 20184067 ~ 20186861 (+) True psenen
XM_043258936.1 mRNA upstream 58353 20146188 ~ 20149817 (+) True igflr1
XM_043258933.1 mRNA upstream 67044 20126733 ~ 20141126 (+) False zbtb32
XM_043258685.1 mRNA downstream 38519 20247178 ~ 20249733 (+) True LOC122358796
XM_043258684.1 mRNA downstream 43333 20251992 ~ 20253736 (+) True LOC122358795
XM_043258683.1 mRNA downstream 53068 20261727 ~ 20267188 (+) True LOC122358794
XM_043259831.1 mRNA downstream 108887 20317546 ~ 20334995 (+) True LOC122359506
XM_043259833.1 mRNA downstream 108887 20317546 ~ 20334671 (+) False LOC122359506
TU159862 other upstream 16716 20189033 ~ 20191454 (+) False G108230
TU159893 other upstream 21309 20184120 ~ 20186861 (+) False G108245
TU159761 other upstream 433785 19721284 ~ 19774385 (+) True si:dkey-262k9.2
TU159763 other upstream 433785 19743371 ~ 19774385 (+) False si:dkey-262k9.2
unassigned_transcript_2152 other upstream 782981 19425117 ~ 19425189 (+) True trnav-aac_27
TU159894 other downstream 38543 20247202 ~ 20249972 (+) True G108245
TU160236 other downstream 1003151 21211810 ~ 21214493 (+) True G108431
unassigned_transcript_2153 other downstream 1044083 21252742 ~ 21252815 (+) True trnai-aau_69
unassigned_transcript_2155 other downstream 1044818 21253477 ~ 21253548 (+) True trnaw-cca_2
unassigned_transcript_2157 other downstream 1046275 21254934 ~ 21255005 (+) True trnag-ucc_4

Expression Profile