RNA id: TU160772


Basic Information

Item Value
RNA id TU160772
length 1582
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G108777
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22587935 ~ 22648345 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAAAGGTACCTTAAAAGcaactttattaaaaatcatgACACGTACAGGAgcacaaaaaaggcaaaaatctgaaattgtgGTAAACCATAGGATTTAAACGGTCCTGAGCAGCTTAAACGTTGGCAAAGGACTCAAGTGATTGTTCATTAAACCACAAGTACTGATTTTCCTGAGAGAAACTGCCAACTTGACATTCCCTAAATACAAAGTGACCGTGTCAGATTAAAAGAGCGGTGTAAAAATTTACAAGGCAGAGTGTAAATGTGACATTCAGAGCCCACATGGAtcaatgaaaaactaaaatccttttttcttaaaaacacataaGCAGCACCTGAAAGCACCCGACATTCATTAGCACAGATCCAACACGAAagggtattattattattatgatttttttttttaaatcatacataGAGTCCTTGTGGAAATCCACATGAATAAAGCAAAGAAGGACGGATCAACTTTGTGCGTTGAAGTAGAAAATTACGAACATATTGAGGCATCAGGTCAGTTGCAGCAAAACACGGCACTGCAAAATCTAAAAAGACAGGAcgtacaaaaatgaaaactttcagATCAACTTAAAACCATACTCTAGACTGGGTTGGTTTTGGGTGAAAGCGACAATCGAAAGAGCAGGTGATCGAAGGCAGGCCGAATCTGGAGTTTTCCCAAGTGACAACCAGGGAATCTGCAGAGGCAGAAACTGAATGGCCTCACCATTATTCCTTAAAGGGCTGCCAAAAAGAACAGTAAAAGGCACAGAAGATGAATAAATTCCCTAGAGGTCTGCAAGAGAAAGCCAAAGCTCTGGAGACGGAGATGATGTCGATTCATGTAAAACAAGACCAAAATGACAACTAAAGAGGAGAACCGTGAAGCCGGAATTAACTTAAGCttcataaaatgtatgaaaagttGGGAAATTAGAGTGAATCAAATCTAGAGACTTGTCATTTCACgattaaaacatttgcaactAAAAGGGACCTAAAAAGGCCATTTCACCAAACAACTGAGAAGTTTACaacttctcaaaaaaaaaaaaatccctttttttaGAATTGCCAAAATACTCAATTAAAATCGAAAAACTTCACCAGGCCGCGCGTCTATACCGTCTACAGTTTGGCGATTGGTGTAGCAGCTACAGCAATGCTCTCGATGGCGCATTCATCCGTTCCTCGACGGATCCTGAAGAACCCATTCTCGCCGGTCTTATGGCACTTCCCGTACCCCACCAACAGCACGGCGTGATTGGTCAGCTCAAAGGGATTGATGGAGTCACGGAGGCCGGTGTGATGGTAGATGCCCTCCTTGTAGTTCATGAAATCCGGGTACACCTCCAGGGCCACGCCCATGGGGCCGCTCCTGACCAGCTCCAGCATCATGGCCGCCTCGCTGCAGCCGCCGTAAAACCCTCCCACGTAGTGATAATCGGAGGCGTAGTACCTTGAGCATTTCTCAGGTACTTTGCAAGGAGAATCGTCCCCAGTGTACGGGAAACAGTCTTCTTCCACAATGCCAAAGTCCTGGATGTATTTACCAATCAGGTATGGAAAACCTCCGTCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252652.1 lncRNA upstream 17607 22619676 ~ 22629112 (+) True LOC122358854
TU160720 lncRNA upstream 82538 22522750 ~ 22564181 (+) True G108740
TU160749 lncRNA upstream 113492 22532872 ~ 22533227 (+) True G108762
TU160726 lncRNA upstream 135461 22508587 ~ 22511258 (+) True G108743
TU160727 lncRNA upstream 136687 22501771 ~ 22510032 (+) False G108743
TU160946 lncRNA downstream 12640 22660985 ~ 22666293 (+) True G108906
TU160994 lncRNA downstream 126433 22774778 ~ 22775573 (+) True G108949
TU161043 lncRNA downstream 189340 22837685 ~ 22838122 (+) True G108981
TU161044 lncRNA downstream 189396 22837741 ~ 22838122 (+) False G108981
TU161045 lncRNA downstream 189472 22837817 ~ 22838122 (+) False G108981
XM_043258709.1 mRNA upstream 29966 22572491 ~ 22616753 (+) True actn4
XM_043258730.1 mRNA downstream 66161 22714506 ~ 22731196 (+) True tyr
XM_043258729.1 mRNA downstream 72606 22720951 ~ 22731196 (+) False tyr
XM_043258717.1 mRNA downstream 103189 22751534 ~ 22764962 (+) True naalad2
XM_043258175.1 mRNA downstream 160435 22808780 ~ 22813270 (+) True lrrc51
XM_043258552.1 mRNA downstream 175718 22824063 ~ 22834787 (+) True LOC122358711
TU160427 other upstream 909032 21736680 ~ 21737687 (+) True G108573
TU160426 other upstream 911001 21735014 ~ 21735718 (+) True G108572
TU160425 other upstream 913612 21731981 ~ 21733107 (+) True G108571
TU160418 other upstream 920545 21724555 ~ 21726174 (+) False LOC122358705
unassigned_transcript_2157 other upstream 1391714 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160996 other downstream 127304 22775649 ~ 22777725 (+) True G108951
TU161070 other downstream 300795 22949140 ~ 22953513 (+) True G108990
TU161085 other downstream 307402 22955747 ~ 22959370 (+) False msantd4
TU161296 other downstream 615831 23264176 ~ 23271291 (+) True G109132
XR_006252725.1 other downstream 744410 23392755 ~ 23393038 (+) True LOC122359600

Expression Profile