RNA id: XM_043258175.1


Basic Information

Item Value
RNA id XM_043258175.1
length 2123
RNA type mRNA
GC content 0.43
exon number 4
gene id lrrc51
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22808780 ~ 22813270 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGAACTGCTGTGACCCAAAAGTTGCTATGATTAAAGAACGCTTTATTTAcagtgatatatatttttttaattattcatttatttaggatttacattttaattgtcattttatgtAAATTCGCTTTTTTTGCTCGTTAGCCTTAATCAAGATTAATCcgtttttgtacttttaaccTTATTGCAATTTGCAgtttttaatcttgttttctgcAGAAGTTGGACCATGTTTGGATCTCCAGTAGATTTTTCATTTAGGGAGCTCAACACGGTTTCAGaCCTGCTCACTGATAAACCTAATCCAGGAGCTCGTCCGCTAAAGCGCGACTCGGAGCAGAAGATCATCGGCACAGCTCTCAGACTAAACAACAACTTTCTCTCAGACTTGACGGGGCTGATGGGCACGCTCTCTTCTCTTTACGCCGAGCCGACGCGTCTGGCCTGGCTCGACCTCTCCTTCAACGAGTTTCAACACATCCACCCAGTCCTCGCTCAACTCAAAGAGCTGCGCTTGTTGTATCTGCACGGGAACCGTATTTGTAAGCTGTCAGAAGTGGATAAGCTTGCCGCGTTGCCGTTTCTCCACACCGTCACTCTCCACGGCAACCCCGTAGTGACCGAGCGCGACTACAGGGCGCATCTGATCGGCACCCTTCCTCACGTGAAGACGATCGATTTCAGCGCCGTCACCAAACAGGAGCGGGAGCTGACTTCAGTTTGGCAGAGGAGCAGAAACCTGCGCAAATCCATCGGTCACAGCAAAGTGGACTGACTTTGCATCTAATAAACGTGGGGTTACAGCTACAGCGAGGTGACTTTAAAAGATAAACTAGACTCCAGAGTTTCTTCATTAGTCGTTTGTGAAGTCACAGGAGCAAGTGGCGACACATCTTAAGCAACAGAAAACCGTCTTTTTGACTAGAAGGCCTTTAAAGCCATGTCACTAAGTTTGAGAATTGCAATTCAAGTCTgctacacataaaaaaaacccccaacaaAACCGCTTTATAATTTTGAAAGTCTTTAATGCATAATTTCattcaacaaaaacagttttaacagAATATcgagaattttttatttttattttttttggtactAGCCTAAGAAATGATTTCTCTGTAAATCAGGTAGTATTCCACATTTaggtaacaaacaaacaaaactcgAACACTATTAGTACACtgcaacagaaaacaaaatatttgcaGCGCATTTCATCCCTTTAAAAACCTCCAAGAAAGGCGGAGGTGCCTTGCCGTGATCTAGAGAGCTAGCTGTGCCACGGCGGTCTGTGAGcttgcataaatacataaaatcaaaataaataattacacaaacatACTGTGTGGCATCTCGGCCTCTGTCGGGGAAACAAGCCGGCTGATTGAATTCACTagctctttcctttttttcggCACAaccgcaaaaaaaaataaacgttgGACTAAGTTAAAgcaatgtaataatatttttcgcTCTGTTAAAAGTGGAACAGGCAAGGTAAAAGCAACCCCGTTTGCTTAGCTAAAAGATCGCAAAGCCTTACGACCGAGGCCTAGCGCGGCCGGGGGGCGCCACAGAGGCGTTCACGCGTCAATCATTCATCTCTAATCATTTTACACTCTGTACATTAAAGGCATTGACACAAAAACGTCATTTACAAACTACGAAGTCCAATTCAAACCCGCCTCCCCATCCGAGACGCCTCTTCAGATGCGACTGCATGACCGTCGGATGCTTACAGGAAAAGTGCACAGTAAGAGAAACACTTTCTCTTCCTTTAAAGACGACAGCAGAGCCGCCTCAGAGGATCCAAAATCTATTCATTCAATTCGTGATGCGGCATGGCGCACACCACCCGGCATAAAAGTTACGCACAGGCCGCTGATCTGTAGAAATAAACGCTTGCGATATAGACCTCGGTGAGAGCAGCGCCGTGTTTAAATTAGATGGGATGAAAACGAGGCTGTGAGGGACTCAAGTACAGTCTGATGAAtggattaatcacatccaaaacaaatcatttggtttacataatgtgttctgtgtgtgtgtctatatatatatatatatagacacacactcacacatgcaggAATATacttcagaaaaatatgttgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160994 lncRNA upstream 33207 22774778 ~ 22775573 (+) True G108949
TU160946 lncRNA upstream 142487 22660985 ~ 22666293 (+) True G108906
TU160775 lncRNA upstream 160435 22587935 ~ 22648345 (+) True G108777
TU160772 lncRNA upstream 160435 22646719 ~ 22648345 (+) False G108777
XR_006252652.1 lncRNA upstream 179668 22619676 ~ 22629112 (+) True LOC122358854
TU161043 lncRNA downstream 24415 22837685 ~ 22838122 (+) True G108981
TU161044 lncRNA downstream 24471 22837741 ~ 22838122 (+) False G108981
TU161045 lncRNA downstream 24547 22837817 ~ 22838122 (+) False G108981
TU161060 lncRNA downstream 56305 22869575 ~ 22970803 (+) True G108986
TU161057 lncRNA downstream 120868 22934138 ~ 22988641 (+) False G108986
XM_043258717.1 mRNA upstream 43818 22751534 ~ 22764962 (+) True naalad2
XM_043258730.1 mRNA upstream 77584 22714506 ~ 22731196 (+) True tyr
XM_043258729.1 mRNA upstream 77584 22720951 ~ 22731196 (+) False tyr
XM_043258708.1 mRNA upstream 192027 22572491 ~ 22616753 (+) False actn4
XM_043258552.1 mRNA downstream 10793 22824063 ~ 22834787 (+) True LOC122358711
XM_043259192.1 mRNA downstream 14080 22827350 ~ 22829929 (+) False LOC122359066
XM_043259193.1 mRNA downstream 14602 22827872 ~ 22829929 (+) True LOC122359066
XM_043259195.1 mRNA downstream 22389 22835659 ~ 22837519 (+) True LOC122359067
XM_043259194.1 mRNA downstream 22389 22835659 ~ 22837519 (+) False LOC122359067
TU160996 other upstream 31055 22775649 ~ 22777725 (+) True G108951
TU160427 other upstream 1071093 21736680 ~ 21737687 (+) True G108573
TU160426 other upstream 1073062 21735014 ~ 21735718 (+) True G108572
TU160425 other upstream 1075673 21731981 ~ 21733107 (+) True G108571
TU160418 other upstream 1082606 21724555 ~ 21726174 (+) False LOC122358705
TU161070 other downstream 135870 22949140 ~ 22953513 (+) True G108990
TU161085 other downstream 142477 22955747 ~ 22959370 (+) False msantd4
TU161296 other downstream 450906 23264176 ~ 23271291 (+) True G109132
XR_006252725.1 other downstream 579485 23392755 ~ 23393038 (+) True LOC122359600
XR_006252721.1 other downstream 580587 23393857 ~ 23394137 (+) True LOC122359596

Expression Profile