RNA id: XM_043258186.1


Basic Information

Item Value
RNA id XM_043258186.1
length 2370
RNA type mRNA
GC content 0.47
exon number 17
gene id dhx40
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10286955 ~ 10299275 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAGCTGCCTATTTATCAGCACAAAGATAAACTCATCCAGGCTGTGGAGGAAAACACATTCCTGATCGTGACAGGTGAAACTGGCAGCGGAAAGACCACTCAGCTACCCCAGTATTTGTATAAAGCGGGTATgTCTTTGCAGGAATGGCAGGATTGGTGTGACTCAGCCCAGGAGGGTTGCAGCCATCACTGTAGCCCAGAGGGTGTCCCATGAGATGGGGGTCCGGCTGGGTCAGGAGGTGGGCTACCAAGTGCGCTTCGATGACTGCTCGACACAGGACACTATGATTAAATACATGACAGATGGCTGTATGCTGAGGGAGATTCTTGCAGATCCCAGTTTATCACAGTACAGCATTGTGGTCCTGGATGAAGCGCATGAGAGGAGCCTGAATACAgatgttttgCTTGGGTTACTCAAGAAAACCCTGTCAAAAGGTTCCCGTGGTCGTAAAACACCACTCAAAGTGGTTGTGATGTCAGCAACATTAGAAACGGAAAAGCTCAGCTCCTTTTATGAAAACTGTCCTGTATTCATGATTCCTGGACGCACATATCCGGTCAAGGAGAAGTTCTGTAATTGTATTGGGCCGAAAGACAAAGATAGTTCTGTCTATGTCAAAGAGGTGGTAAAGATGACTTTAGACGTGCACACTAATGAAGCAGCTGGTGATATTTTGGTCTTCCTCACTGGACAGTCTGAAATCGAGAAAGCTTGTGATTTGCTCTTTGAGAAGGCTGAGATCTTGGACTACCGTTATGATGTCCATGACCGGACCGTTGAAGGCCTGCTTATCCTGCCTTTATATGGATCCATGCCAACAGatcaGCAAAGACAAATATTCCAGCCTGCACCAAAAGGTGTGAGGAAGTGTGTGGTCGCGACGAATATTGCTGCAACCTCACTCACAATTGATggaataagATATATCGTTGACAGTGGATTTGTCAAACAACTAAATCACAACTCAAATGTTGGCTTGGATATTTTGGAAGTGGTACCTATTTCAAAAAGTGAGGCTCAGCAAAGAGCGGGCAGGGCTGGACGAACCTCAGCAGGAAAATGCTTCAGGATTTACAGTAAAGACTTCTGGGACACATGTATGCTTGAGTACACCATTCCAGAGATTCAGCGCACCAGTCTAACATCTGTCATTCTCACACTGAAATGTCTCGGTATCCATGATGTGATTAGATTTCCTTACGTGGATTGCCCAGAGGAACGCTTTATCCTGACCGCTCTGAAACAGCTGTATCAGTATGATGCTATTGACAGGAGAGGTGAAGTGACCAGGCTGGGGAGGTTGATGGTGGAGTTTCCTCTTCCTCCGAATCTTACTCGAGCTTTGCTCAAAGCTGCTGCTCTCGGGTGTGAAGACGTAATGCTGCCCGTAGCAGCCATGCTCTCAGTAGAGAACATCTTCATTCGACCAGgtaaacCAGAAGGACAAAAGGAAGCAGAGATCAGACACAAAGAGATAGCAGCTAGTGCTGGCGGCTCCAATGATTTCCTCATGCTGCTCTGTGTGTTTGAGATGTGCAGAGCGAGCGACAATCCGTCCGCGTGGTGCAAAGAGCACTGGATCCACTGGCGAGCCGTGAAGTCAGCCTTCAGCGTTGAGACTCAGCTCAGGGAGATTCTTCTTCGCCTCAAGCAGCTGAAAGACTTTCCACGTGAGACGTTTGAGGGCAGTCGGAGTGAACTGCTGCGGCAGTGCCTCTGCTTGGGGTACTTCACCAATGTAGCCAGGAGATCTATTGGGAAATCATTCTGCACCATGGATGGACATGGGTCGAGCGTTCTCGTTCACCCTTCATCATGCCTCTTTGGTCAAGAATTGCATCTGGATTGGATCATCTTCCATGACGTGTTGGTCACCTCGCGGGTGTACGTGAGAACAGTTTGTCCCATCCGTTACGACTGGGTAAAGGACCTGTTGCCGAAGCTGCACGAAATCGACGTCTATGAACTGAGTAGCGTTGCTAGGGAAGAGGTAACCGATGAAGAGATGGCGCAGTGGGAGAAGAAAGAGGCAGCAAAAAGACAAGCAGAAGCCCGGGAGGATGCGGCGAAGAAGCTGGAAAAGCGAAACGATGAAAGCTCGATCACAGAGGCTCGCGCTCGCTATTTGGAGCGAAAACAGCATCGGCTGCAAAGAAAGGGCACATGAGAGGATCAAACACTCACTGCTGATACTGCAGCTGCTAAAAACAAATACgaaaaagactttttaatcTCAGATTTTAAAACGTAATCCTCATTTACTGCCATAGCACTCTGGTCCCTGCAGATTTTGACTTTGGCTGTTGAGTCATATGTAATATACgttttatatctttttatgtaaataaattgttttttttactta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155406 lncRNA upstream 114236 10177872 ~ 10178226 (+) True G105242
XR_006252623.1 lncRNA upstream 114634 10172957 ~ 10177828 (+) False LOC122358545
TU155405 lncRNA upstream 114654 10177325 ~ 10177808 (+) False LOC122358545
TU155404 lncRNA upstream 116840 10173307 ~ 10175622 (+) True G105240
TU155403 lncRNA upstream 117541 10171862 ~ 10174921 (+) False LOC122358545
TU155630 lncRNA downstream 37491 10336766 ~ 10337446 (+) True G105395
TU155631 lncRNA downstream 37491 10336766 ~ 10337398 (+) False G105395
TU155632 lncRNA downstream 37491 10336766 ~ 10337333 (+) False G105395
TU155661 lncRNA downstream 88208 10387483 ~ 10387744 (+) True G105411
TU155663 lncRNA downstream 92184 10391459 ~ 10391718 (+) True G105413
XM_043258379.1 mRNA upstream 51214 10238177 ~ 10241248 (+) True LOC122358538
XM_043258146.1 mRNA upstream 93184 10190587 ~ 10199278 (+) True relb
XM_043258145.1 mRNA upstream 93184 10190588 ~ 10199278 (+) False relb
XM_043258990.1 mRNA upstream 105291 10179266 ~ 10187171 (+) True clptm1
XM_043259759.1 mRNA upstream 182019 10093455 ~ 10110443 (+) True ypel2b
XM_043259923.1 mRNA downstream 1065 10300340 ~ 10325420 (+) True cltcb
XM_043259924.1 mRNA downstream 1065 10300340 ~ 10325420 (+) False cltcb
XM_043259925.1 mRNA downstream 1067 10300342 ~ 10325420 (+) False cltcb
XM_043259926.1 mRNA downstream 1067 10300342 ~ 10325420 (+) False cltcb
XM_043259927.1 mRNA downstream 26630 10325905 ~ 10336412 (+) True vmp1
TU155413 other upstream 85010 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 182021 10093655 ~ 10110441 (+) False ypel2b
TU155072 other upstream 619117 9669634 ~ 9673345 (+) True G105011
XR_006252680.1 other upstream 668490 9588789 ~ 9623972 (+) False traf4a
unassigned_transcript_2149 other upstream 717519 9574855 ~ 9574943 (+) True trnar-ucu_52
XR_006252665.1 other downstream 53886 10353161 ~ 10390600 (+) False snx19b
TU155825 other downstream 422697 10721972 ~ 10728395 (+) True G105513
TU156035 other downstream 1071361 11370636 ~ 11371927 (+) False LOC122358628
unassigned_transcript_2151 other downstream 1521286 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 2542902 12842177 ~ 12847378 (+) False spa17

Expression Profile