RNA id: XM_043258193.1


Basic Information

Item Value
RNA id XM_043258193.1
length 1779
RNA type mRNA
GC content 0.47
exon number 3
gene id tlcd5a
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12898047 ~ 12902460 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATGCGTCTTCCTCTTTGTTGTCATCCTCGCTGTCGTCCAGCCGCTGAGGGGCCGAGGGGCTGAAATGTGGCTTTTGTTTGTGTGGTGATTCGCGTACCATCTCCAAGACGATGCCGGAGCCGATCACTGAGATCTCTCGAGGCCTcgtgtccgtggtgctgaagcGGGAGGCGCGGAGGAAGAAGACGGCGTTCATGCTGAGCCTGAAGAACACTTCGGCCTGTCGGTGAACATGCTATTGAGGTGACTATTTGAAGAGGTTCACAGACTAAAGATGTCACCGTTGGTGCTGGGAGTCGGAGCGTGCTTAGCTGGCTGGATTGCTCTTTATGCTTTGCTGTGCTACACAAACGGCTCTTGTGGCTATGAGTGGAACTGTCGGCTAGTTACGCTATTCCATGGCATCCTTGCAGTCTGTATAACTGCCTACATTGGATACGTAGATGGACCGTGGCCTTTCACCTACCCAGGTACAAAGAACACCCCTCTGCAGATCACCGCTTTGGTGGTCAGTCTGGGCTACTTTATATTCGACATGGCCTGGTGCGTGTACTTCCGCACAGAGGGCCTGGTGATGCTCGCCCACCACACCATGAGCATCCTGGGTATTCTGCTCACCCTGTGGCTGGAGGAGTCGGGCATCGAGTCCTGCGCCGTGCTGTTCGGCAGCGAGATTACAAACCCCCTCCTGCAGACGCGCTGGTTTTTGAAACACTCCGGCCGCTACGACGGCTTCCTCGGGGACGCGGTGGACGCTCTGTTCGTGCTGTTGTTTGTGTGCATGCGCATCTTCGTCGGCGGCGCCATGCTGTACTGCGAGCTGATCTCTCCGAGACCCAAGTTCATCATCAAATGTGGCGGCGTGGCCATGTACGCGCTGTCCTGGGTGTTCATGGTCGACATCGGCCGCTTCGCGTACCGCAAATACCAGCGCTGGACGAACGGCCACAGGGCGGCGGAGGTCAATGGGCGGGATGCGAAGAGAGACTGAAAGATCTCTCAGATCAGCGTTCGGCCTCTTGTTTCTAACACTGGAGAGAAGGGGGAGAATCAGAACAAGTGTGCCAGCTAATAAAGCTCTGCAGCTAAtagatgtttacatattttttaaaaggataTCAGCCATTAAAGTTTATTTCTGGTTGGTAATATACACATTAACTCTAAATTCTTACAATCAAATctaatttgttatatttgtacTCATATAGAACGACGTGTTTAAGTACtggaaatatttgatatttttgtaattagGAACACTACTTGttataaattttaattagcgatgttgcttttactttttcttttttttcccccattaaaCTTTTAGTACGTGCAATATTCAGAAATGATCACGAAACGCTACTAAATGTTTCTGGAAGATTACCGAATGATTTGTGTGCGATTAACGACTCGTCTTAGAAGTGTAACCTATTTTTAAATCGTGAGGCTGAGTGTTGTCTTACAGGCTGTTTTCATCTGTTACGGTGATTTGACCACACCGGATGATAAATCGGCAAACGTCGTCACCGTCAttacaataatgcatttttagggtGTTGTAATGTTGCAGTCGATCAacgaaaaatgtattaaagtttaTTCAATGACATCCTGATTTGAAAGAACCTCTTCTGATTAATGCGATCCAATTCTGAATCACAAATCATTAAGATAATGGGGTTTAATAACGGAAATTGAGGTCTTTGTGGTTtaactgtttgtttaaaaaaaaaaacaagtgttaTTAAAGGTTACAGTTGGTGTTTTGTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156915 lncRNA upstream 49380 12842177 ~ 12848667 (+) False spa17
TU156914 lncRNA upstream 49633 12842177 ~ 12848414 (+) False spa17
TU156833 lncRNA upstream 117672 12773457 ~ 12780375 (+) True G106157
TU156859 lncRNA upstream 125977 12771795 ~ 12772070 (+) True G106171
TU156845 lncRNA upstream 156970 12738051 ~ 12741077 (+) False G106161
XR_006252599.1 lncRNA downstream 42617 12945077 ~ 12955807 (+) True LOC122358384
TU156962 lncRNA downstream 355776 13258236 ~ 13798248 (+) True G106234
TU157016 lncRNA downstream 432848 13335308 ~ 13336677 (+) True G106276
TU157129 lncRNA downstream 777720 13680180 ~ 13685449 (+) True G106350
TU157134 lncRNA downstream 789919 13692379 ~ 13692893 (+) True G106354
XM_043259754.1 mRNA upstream 1066 12883017 ~ 12896981 (+) True oafa
XM_043258325.1 mRNA upstream 29394 12861778 ~ 12868653 (+) True pde9ac
XM_043258326.1 mRNA upstream 29394 12861778 ~ 12868653 (+) False pde9ac
XM_043259874.1 mRNA upstream 39547 12852856 ~ 12858500 (+) True hepacama
XM_043259875.1 mRNA upstream 50661 12837582 ~ 12847386 (+) True spa17
XM_043259170.1 mRNA downstream 546 12903006 ~ 12942649 (+) True arhgef12a
XM_043259169.1 mRNA downstream 554 12903014 ~ 12942649 (+) False arhgef12a
XM_043259171.1 mRNA downstream 554 12903014 ~ 12942649 (+) False arhgef12a
XM_043259848.1 mRNA downstream 54637 12957097 ~ 13219219 (+) True grik4
XM_043259849.1 mRNA downstream 54637 12957097 ~ 13219219 (+) False grik4
TU156910 other upstream 50669 12842177 ~ 12847378 (+) False spa17
TU156912 other upstream 50669 12842177 ~ 12847378 (+) False spa17
TU156913 other upstream 50669 12842177 ~ 12847378 (+) False spa17
unassigned_transcript_2151 other upstream 1077415 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 1526120 11370636 ~ 11371927 (+) False LOC122358628
TU157171 other downstream 1014113 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2014045 14916505 ~ 14916883 (+) False tbx4
TU157786 other downstream 2018675 14921135 ~ 14925515 (+) False tbx4
TU157969 other downstream 2804053 15706513 ~ 15712439 (+) True G106937
TU157970 other downstream 2804053 15706513 ~ 15710209 (+) False G106937

Expression Profile