RNA id: XM_043258202.1


Basic Information

Item Value
RNA id XM_043258202.1
length 3286
RNA type mRNA
GC content 0.46
exon number 3
gene id map6b
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11828691 ~ 11835875 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCATATTAGCTTTttaacctaattaaaaaaacctaaatgcaattagattttttggtttgaatgcacaataaaaaaaacatgctttttgaaAATGGTTAAAATCGGATACTTTCGTATATTCATGGCCGTACAGAAATGTAAAACTACAGCCAGAATTTTCTTTCAGTTGGCCAAAATAACACCTAATGCAAAGTTGCAAACAATCACTGTATATGTAGGAAACCTTTTATATATTCAAGGGTGGgaatgatgttttttctttgtgtcttttAATGCTGAAGGTGCGTTCTCGTAgttattcatataataatagacgttataaaaacagttgtgcattattacatgttttataGGTCCGGTTGACATCTCCAAAATGCAACAAACAGCTCTCGTCTTGTCATTGCATGAGATTTTCAGATCAACAAGTCCCAGACTCGTGCAGCGGAAAGGATGAAGCGGTGGGTGGATGTGGATGTGGATGTGTGTCGGTCTTGAAATGGTTAAACGAGCGGCGTCTCCACCCGATGCTGCCCAGACGCTGACGGCTGCAGGTGATAGTTCATCCGCAGACCACGAGCGTTTTCCGAGGAAACACGGGAACCGGTGTCTAGCCATACAGCCGCCGAAAGAGGTGTCCTCTCTGTgaacaacattttttgtttgcatctgAAGCGGAGAGCAAACAAGCACATCGAAAATACTCTGCCGAGGCAAGTGCGCAAGCGCGTGCGCCAAGATACAGGGGATTTTAACACTCTGGAAGGATTTCTCCCCTCTGAAGAGACATTCAAAGGATAAAAACTAATTCTGTATATATTCTGCACGCGTTGTGGTCCTCATTTCTGAACCGTTTCTCTTAAGATTCAAGCCTTCGCCTCGTCGTTATCGATCATGGCATGGCCCTGTATCACCAGGGCTTGCTGCATCAACCGCTTCTGGAGTGAGCTGGACAAAGGTGACATTGCAGTGCCTTTGGTTTTCACGAAGTATTCGGATGTGGCCGAAGTGCAGCATCTGCACCCCCAGCCCAAGCCGTTGATATCGCAGAAGCCGGTCCTCGCGGAGTCCCAGCCTGCCCACGGCGCTCACCAGGAGGCGTCGACCAGGGCGACTCACGCCGAtgccgcagcagcagcagcagcatctcaAGACGGCTCCGGCGCTTCCGTGATGCGCGAGGATTTCAGAGCCTGGAGCGTGCGTCCGGAACGAAGCTGCAAACCCAGAAACGAGTTTCAGCCATCGAAGGCCCCGTTCAGCACCGTGACTCAGTACCAGAAAGATTACAAACCGTGGCCCATTCCGAAAAGGGGAGATCACCCGTGGATCCCCAAACCCAGTCCTGCTGCGCCCTGCAAGGCTGAGAGCAAGCTCTCCAAACAGGAGCAGGCCGCTGCTGAGGTGGAAACCGGCGTGGAAAAATGCGAGATCGAAGAAAAGCAGCAcgagaaagagagcaaagacaGGAGAAAGAAGGTGGACAAAAAAGAGCATGTGTCAGAGGGGATCAAAATGGAGCAAGGGGTTGCAGTGGAGGGAAAGAGGAGGTCGGCTGCAGATGCTCTCAACAGGCAGATCAAGGAGGAAGTCAACTCTGGAAGTTCTTATAGGACGGAGTTTAAGGCTTACAGAGATATCAAACCAGTGAAACCCATCAAAGCGAAGTCTCAGTACAAACTCCTGGTGGAGGAGAAGACCAGCCTGGAGACCAGTTACAGCGCCACCTTTAAAGGAGAGCAGGTCAAACCTCAGGCCACAGACAACAAGCTGCTGGAGCGCCGTCGGATACGAAGCCTGTACAGTGAACCTAGCAAAGACTCCAGCAAGGTGGAGAGGCATAATATATCACTTTCCAAGCCAAAAAAGACAACAAGCCATAGCAAAACAGTGAAAAAAGCAAAGGAGAAGCCAGTCGCTGGGAGCCAAGCCAAGAAGAAAACCTCAGTGAGCAACCAGGAGCCAAAGCCAGAGGGAGGGGTCACCaagaaaagcaaagaaatgATCAACAGACTAGCCGAGGCAAAAGATTAAGTGCACTTTTGCGTTTGGGGGGGTTGAGGAGGCTATAATACAGAATAGAGGACTCTCATCCCCTTGTTCATGACCTTACTCTAATGGCCCGACTCTGATGGTGTCTTTACCTACCTATTGTAGTGGATCAAGGCTTGTCTGCTTGATTTGTcttgactgtgtggccactgtCCAGTCTATAATGAATCTATCTTTGCTTTTGCCCCGCGTCTGCTCCCTTTCCATATACATCAATAGCTTTCTCTGTGGCAAAGATGATTCACCGATCCTTGTTGCATGCTGCCTCTGAGCATATGGCCATATGCCTTATTATATAAGATAAGGTTTTTGCTTTATCTTGCACTGAAAGATATTTACTGCAAACATTAATGGTCTTTTCTTTCAAGCAATCTAATGTGATATGGACTTCAGAGTATACGGACCACTCTAATTAGATGCACCGATAGCATTGCTCAAACACTAAGATGTAATATTTGTCACCTCACAGTTGGATTATACCAATGTTGTATTCCTCACAAACGATCAACAATGAACACGAGAACGTCTCTGTATCTCAAACTGCATGTGACACCTGAACGTAGCAGTTAGGAGCCTTACGGGTCCACAGGAGCACCATGTCTAACAAACGAACACGATCCAGCTGTGCTATTTGAGTATTTCACTTCGTTCGACAACAGTGCCGGTCATTTTTAAACCAACCGAGGCATGGTCTCtcttaaaagtgttattgttaCCTTGTAGTGTAGAGCGTTATGCTATGGAGACCTATTTACGCTTAGCTTGCTCTGCTCTCAATAAAGCAATGTTCAGATGTGCTCTCATATGCATCATGCTATGTAATAAGAGAATTTGCTGATAAACCTAAACCTGCAAAACTGCCTGCTGTAAAATGGATGATTGAATGGGGAAGAATGCTGCTGAGCATACAGCTGAGGTCCGTGTGATTGACAGACAGAAGCATGCCCTTCATAGTCACCTGTATGTTAATCATCATTCTGACCCGATCTGGTCTGGAGGGGTGAGAGCCCTCTCAGTGTAAATCTACAGCCTCTTGGTCCCGAGCTCCTCCTGGGTTGTCCTACACGTGCTGTGCACACCATTCTAGGTGCTATCCTCAAGCTATGCTTTCCATAACAGTAGTGCCTGTATATTGAGCAACATAGGGCCATCAGATGTCCAAGTGGTAATTCTAAGTGTGATGTGCTTGTGTTGTGAGCTTGCATTGAAtgaaattgattaaaattattaaagcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156198 lncRNA upstream 66010 11762395 ~ 11762689 (+) True G105739
TU156192 lncRNA upstream 73180 11753527 ~ 11755519 (+) True G105736
TU156177 lncRNA upstream 99549 11726547 ~ 11729150 (+) True G105730
TU156043 lncRNA upstream 272401 11555878 ~ 11556298 (+) True G105650
XR_006252604.1 lncRNA upstream 351160 11474428 ~ 11477539 (+) True LOC122358459
TU156322 lncRNA downstream 65476 11901351 ~ 11903829 (+) True G105819
TU156363 lncRNA downstream 191720 12027595 ~ 12030475 (+) False LOC122358755
TU156376 lncRNA downstream 234424 12070299 ~ 12070863 (+) True G105860
TU156393 lncRNA downstream 255979 12091854 ~ 12093153 (+) True G105870
TU156396 lncRNA downstream 261029 12096904 ~ 12097497 (+) False tnfaip1
XM_043259889.1 mRNA upstream 1606 11822083 ~ 11827093 (+) True thap12b
XM_043258874.1 mRNA upstream 8411 11808207 ~ 11820288 (+) True dyrk1ab
XM_043258875.1 mRNA upstream 8411 11809630 ~ 11820288 (+) False dyrk1ab
XM_043259718.1 mRNA upstream 21751 11789941 ~ 11806948 (+) False alcamb
XM_043259247.1 mRNA downstream 1209 11837084 ~ 11842624 (+) False zgc:112083
XM_043259246.1 mRNA downstream 1212 11837087 ~ 11842624 (+) True zgc:112083
XM_043258915.1 mRNA downstream 109210 11945085 ~ 11952127 (+) False spint2
XM_043258914.1 mRNA downstream 109211 11945086 ~ 11952127 (+) True spint2
XM_043258779.1 mRNA downstream 129548 11965423 ~ 12001560 (+) True plekhg2
unassigned_transcript_2151 other upstream 8067 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 456772 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 1100304 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1438099 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 1621247 10204839 ~ 10207452 (+) True G105248
TU156910 other downstream 1006302 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 1006302 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 1006302 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 2080698 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 3080630 14916505 ~ 14916883 (+) False tbx4

Expression Profile