RNA id: XM_043258213.1


Basic Information

Item Value
RNA id XM_043258213.1
length 2379
RNA type mRNA
GC content 0.43
exon number 10
gene id jam3a
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11558013 ~ 11566017 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTCTCTAACACTGCCATCTGGTGTTGAAAGGTGGCATTTATGCCAGGCGCATTAATTCGGctaatcatatttaatgtaaatacgTTCGTTCTTCGGTCACTCCCTTTTAATTCCAAATCCccttttaaactattaaaaaaatacgaCCACGTGTCCGAGACATTAGCCTGCGCCTAATGCTAATCACCGCATACTGACATAATTCTCGATTTAGATCTCAGACACGCTTAAGCACTATTTTAACACCCCCTCTTTCGGCGCAATCAACGTATCTAACATTAACGCTCATCATCAACCGGAAGTTCGCGAGCGCCTTCTCGGCCCCTCCTCTCTCTTCCGCTCAGATGTCCTTGTAGCTATGGAAACTCATCAGCGGCAGCATCCTCCAGTCCGTCCACCCCGTCGTCTGGACAGCTAAGCTAAATTCTGCGCGTAAAACATCTCCTCAAAATGGCGATCAAGCGTCAAGCGCTTTCCTCGGTGCTCTTTTCGTGGCTGTGCACCGGTTCAGCTTTTGCTGTAATTCTCAGAACAACTGAAAAATCAGTATGGACAAATGAATTTGAGTCGATTGAGTTGACCTGCTTGATAGAGTCCATTTCTACAAACAATCCCAGAATTGaatggaagaaaataaaaaatggcgTACCCAGCTATGTctatttccaaaataaaatttcaggtaaTTTGGAGCACAGGGCTTTGCTGAGAGAGCCTGCAAACCTTGTAATCCTGAACGCCAGCAGATCGGACACAGCTCAGTATCGCTGTGAGGTGGCAGCCATCGACGACCAGAAGCCCTTTGATGAAATACTAATCAGTCTCGCTGTAAGAGTGAAGCCGGTGATGCCCAGGTGTAGCGTGCCGGAGGCGGTTACGGTGGGCTCAAGCACTGAACTGCGCTGCATTGAGAACGAAGGCTTTCCGCAGTCACAGTATCAGTGGTACAAAAACAACGAGGAGCTGCCAGAAGACCCGAAAACCAGCAGCAAGTTCTACAATTCTTCATACACCATGAACACCGAGACTGGTTCCCTGGTAAaaattCGGTCGGTGAAGAAAGAGGATGCGGGTGAATACTTTTGCCAGGCCAGAAATGAGGCAGGATGGTCGAAATGCAGTCCTCAGATCATGGAAGTGTATGATCTGGACATTGTGGGAATATTCCTGAAGGTATTAGGTGGAGTGGCGGCGTTTATATTCGTCCTTGTGGGGATTTGTCAGATTCAGAAAAGTGGCTACTGTTCCTGCAAAGACCACAGGAAACCAAttacaaagtacCCCAGCATGAAAACAGGATGGACTACGCCAGTCCAGATGAGGGACATTTCCGCCACAAGTCCTCCTTTGTCATCTGAAGTCAAAGAAGAGGAGGCGAGCGCTCAAGCTGGGTCGAGGCCTCGTGAGCTGACTTTTGAACTGTCAAATTGTGGATTTTACGCAGAGGTGCGACTCGAGCCTCGTGGCTTGCCAAAGTTATTACAGAAAGGAAAACTACTGTGTTAAACAGGGAATTTTTACTCCccttattttgatttaaacgGACAGGACTCAAACACAGGTTTACTTAAAACACcacagtttatatataaaaatggctttCAGAACAACACTAAGATTTATAGTTATTACATGCATCTTGTGAAGTGAGGATCATTGTTGCAGCAAAACGAACACGACGTAAAAGATGGGGTTTTTATTGAGACTTTGCAAATAATTGTGAATTTCTGAATGTCTGTTGCACTTCAAATTGTAGCAAGGCTGAATCTGCATCCCGGTGCTGCTGTATGTTTGCCCAAAAATAGTCAACACGTAATACCGGTGCAAGAATTTACATGTCTTGAaggtaaatattatatttcccACCGGAGATATAGCGTGCGACTATGTGAAGAAGCCTGTCGGTGTAAATGTGTACAATGCCATGCCAAGACTGTTTTATCTCGGTCACTTTTGAGAAGAGTGTTAGTGTCTCCATACTAGTTATTGAGTTGAACCATAAATTTGTAGCATTTTAGTTTGAGATTCAATCGAACATCTCCTTGAAGTCAGTAGACTTGGCTGTGCAGGATGATTCATTTACTTAGTTTCGTTTTTTGAAATATTCCTCTAGATACAGATTACGCACTTGTGGGTTTTTCAGAGTGCCATTTCTGTGTTTAAGTGACCTTCAATgctttataattgttttatacgTTTTGGACATATTGTCCAggtgttattgttttaatctATTTATAATATCTAGGTATATTGTAGTTCACTCCAGAGTAGTAGTTAGACTGTGGGCCGTGTCACAAGAATAAAACTGATTATGTGGAAGTGATCGACATTGTCTatccatttattttgtttttaaaacatgtagcTATATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156043 lncRNA upstream 1715 11555878 ~ 11556298 (+) True G105650
XR_006252604.1 lncRNA upstream 80474 11474428 ~ 11477539 (+) True LOC122358459
TU155955 lncRNA upstream 105975 11073323 ~ 11452038 (+) False G105587
TU155957 lncRNA upstream 116130 11073323 ~ 11441883 (+) True G105587
TU156019 lncRNA upstream 219080 11338265 ~ 11338933 (+) True G105628
TU156177 lncRNA downstream 160530 11726547 ~ 11729150 (+) True G105730
TU156192 lncRNA downstream 187510 11753527 ~ 11755519 (+) True G105736
TU156198 lncRNA downstream 196378 11762395 ~ 11762689 (+) True G105739
TU156322 lncRNA downstream 335334 11901351 ~ 11903829 (+) True G105819
TU156363 lncRNA downstream 461578 12027595 ~ 12030475 (+) False LOC122358755
XM_043259947.1 mRNA upstream 178583 11377405 ~ 11379430 (+) True LOC122359584
XM_043258505.1 mRNA upstream 185322 11370248 ~ 11372691 (+) True LOC122358628
XM_043258280.1 mRNA upstream 260293 11291353 ~ 11297720 (+) True LOC122358473
XM_043258281.1 mRNA upstream 260293 11291353 ~ 11297720 (+) False LOC122358473
XM_043258178.1 mRNA upstream 298632 11255909 ~ 11259381 (+) True LOC122358387
XM_043259586.1 mRNA downstream 1373 11567390 ~ 11573448 (+) True vps26b
XM_043259967.1 mRNA downstream 9553 11575570 ~ 11579639 (+) True acad8
XM_043259564.1 mRNA downstream 89838 11655855 ~ 11704963 (+) False zgc:77784
XM_043259562.1 mRNA downstream 89839 11655856 ~ 11704963 (+) True zgc:77784
XM_043259566.1 mRNA downstream 89840 11655857 ~ 11704963 (+) False zgc:77784
TU156035 other upstream 186086 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 829618 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1167413 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 1350561 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 1447572 10093655 ~ 10110441 (+) False ypel2b
unassigned_transcript_2151 other downstream 254544 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 1276160 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 1276160 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 1276160 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 2350556 13916573 ~ 13917262 (+) True G106376

Expression Profile