RNA id: XM_043258226.1


Basic Information

Item Value
RNA id XM_043258226.1
length 4889
RNA type mRNA
GC content 0.53
exon number 28
gene id si:dkey-103g5.4
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12680270 ~ 12701805 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATTAATCAGTTTCATGGTTTCACTGTGGCCTGTAATCTGAACTGGCAGCATCAGGTTGCATCTTTCTACCTATTGGTATGTGTGATACTTTATCTCTAGACTGTTCATGAATCATTCAGCATGGCAGGTAGAGAGCTTCCTGTATGCCTTCAAGCTGTCTCTGAGCCCTGGACAGCAAACTGACATGATGTGCTGGTTCAGAGTTTGCCTCTTTTGGCCTACACTACTTTGCTGGTTCTTTGCCCCAAGACTAAGCATTGCTGTTGGATCAAACATAACTCTAAGACTTCCTGAAAGATCTTCCTGCAAACCAGGGTTTTACTGCCCAGAGGGAGGTCCAGTTCCATGTCCCAAAGGGACATTTGGACCAAGTTTGGGGGCCACGTCCATACACGACTGTATCGGCTGCCCACAACATCACTATGGGCCTAGAGAAGGCTTGAGCAATTGCCTGCCTTGTGGACCCTGGTCACAGCAGCCTCTGCCTGGACAGGACAGTTGTACATGTTTGCAAGAGGGTCAAGTCTTTCAGGCCAGTGACGGGAAATGTCCATGTACTTTGGGATACACACAAAAAGGAGAAGTCTGTATATTGAAGGTTTATGAGATCTGCAAGGATGGAAGAGCACGTAATCAACATGGAGAATGTCTGCACCACAAACAGTGGAAACAATATTGCTCTCAGCAGGTGTGTCCCTCTCCTGAGTTGTATGAGGGCTATGATGGTTCTCTGGGACTGTGTGCATGCAGAGGTCTGTCCAGGCCTGAGCCAGACAGAGTTGAGTGTGTGGGCTGGTGCCAGAGCATCCTGAGTCCAGTTCTGCAGCTGGTTTGCACTGGGAACCTTTACCTGCTCTACATGGAGTCTaatcaacagGTGAGCATGTCTGGAAGCATGCTGGAGACCGTCCTCAAACACTGGGACTCCCGTGGGAGTTTGCAATGCAATGTGCAGCTCAACTTCTCCAGGCCTGTGTACACATTGCAAACAGGGGAGGCGGGCTTCTTTGGTCTGCTTAATGCTGTCCCCGTGGAGGTCAGGAGGTTGATTCTGGCCCATAGCCAGCACACTAACAGCCATGTTGGGACGCTAGATACAGACCGAGGAAACATCAAAGACAAAGAGGAAGATTTGGACTCTCACTGGTCCAGTAAATCCTCAGCGTTCGGTACATCCGGTATGAAACCTGGAGGAGTCTTAAACCCGACAGCATGTCTACATCCGGCAGACATTCTTCTCTTTACTGTGACCCAGCAGCACTATCCCCAGTATGATCTAGACAGCTTGTACAACACTAATGCTGCGTTTGACTGGGGTCCCTTCAGATTATTGGCACAGGACCAAGAACTGGCACAATCTGCCCACTCCCTTTTTTCCATAAGTCTTCACGAGCCTGGGGTGTACGTCTTCAAACTCAGTAGCAACCAACATAGGCACATGTATGTGAAGGTAGTGCCTGCAGGTGGAGAGTGCTATGACGCTGGACCCTTCTTTCCTTCTGACCCACATCATTTGACTCGGATGGGCATCGCACAGAGGCGCCAACTGCTGCTCCGCCCTGATTGGCTGATGATCAGTGGGCTTTTAGTAGGAGCTGTGGTAATCCTGTGCCTGTGCATCACAATATTGATCCTGTTCAGGGAGTACGGCTGGCCTGAGAAACTGCCAGCTCAGGCCAGATATCGTGATCTGCAGCTCAGGTACAACATGGATGACTATTCATCAAAGGGCTCCAGGGTGGTGgctgtgaaaaaaacacatcGAAACCTGCAGGTGGGGTTGACTGAGGATTCGGTGCAGAGAGCGGTGGCTCTGGTTTCAAATGAATTCTGGGACTACGAAGAGCAAGTGGATCTCGAAGCCTTCAGTTCCAGCACCTTCTACGACATCCTACTCAAGCACAGCGTGTCTGTCACGATACGTCTCGGGCAGCTCAGAGGAGAGGTGAAGCAGCTCTATCAGGGGGTGCTTGGGAAGCTGAGAGAGCTCCACCCTGGCTGGAGGATGTTTGGAGGGAAAACCGAAGGTCTGGAGAGGCAGGTGGAGCAGGAGATGGTGCGAAGGAGAGCACTGGGCAGTCAGATGATACAGCTATTGGACAGCCAGCTGCAGATCCTGCGGGTGGAGATGAGAGCGCAGCGGGCCATGCAGAAGACCTTCAGAGCGCGACTGAGAGAAAGTGTGAGGCTTCTGAGACTGCTGGCTGAGGGTCAGACCTCGCTCTGGGATAGACACATCAAGCAACATGTTCTGGAGAGAGTAGCCGTGCTGTCTGATGAGATGACTGAGATGGTATCAGTGGAGAGCCAGAGGTTGGGGGCTTGGGTTGTGCTTAAAGAGGGCACTGGAGCACAGCTATTATGCCCTGCTACTGGATCGGTCCTCAGTAGGGAAGACGTCATCGCTTCTGATGGAGCCGTTAGAGCTTGTGATGCTGTTCATGTAGATCCTCTCACAGGCCTGATTCAACCCAACTCTAACGCCCATATGTTACTGGCCAGTGGACACAGCATGCAAGTGCCCCCGGACTTCTTCCTGCACCCCCAAACTGGCAAACTACTGCCTGTGGCGGGAAACGTGGGCTTTGATCCTGCTTCCTCCACCCTTGTCGTTACAGCCGATGCTTGTGTTGGTGAGTTGGGAAAATGGGAATCTCCCCTGCTGCCTTTCATTCCATACCCTCCATCCCGCCATGCTGAGATTCATGCTGCTTCTAAACTACGGGGGCTTCGTTCAAGCCAAAGGCTGGTGTTCGGAGGACCCATGTGTGACTGTGACACTGGTGTTTTGGTGCCTATTCTGGCCATCACCATCCATCCGCAAACAGGATTGGTTTATCCTTTGGGAGGTGTGTACACGTGTCCCATCTCGCGCCTGAGGCAGCCTATTCAGATTGGCTGTCCCATGCTGGACCCTCGTACAGGCGACCTGGTGCTCATCACCGGCATCACTCTTGATCCCCATACAGGGGCTGTACTTCCAGTTGGGGGGCTCCTCCTAAGCGAGTCTTTCATCGAGCCCTTGAGCGGCCGGATGGCGCGGGTTGGTGGAGGCAGTGTGCGAGGAGGAAAGGTGGTGCCTCATGCTGGTGGTTTCCAGGCTCTGCTGGACAGTCAAGCTCTGGGGGCTTGCTTGCGGGTTGCAGAGCTCCTGCAAGGATTCAGCGAGGAGTGGAGCTCAGCAGCTGCAGATTTACAAGGTGACCTGGACAGAGTTTCGGCAGCAACGTCGGAGCTGGAGCAGGCCTGGAAAAGCAGCCAACACTGTATGTTGCAGCTGCTGAGTCGCCTGGAAGCCGTACAGGAACAGGCCAGGGGTGTGGTGGAGAATGGCGGTAGTGTGGGGGAAATCAAGCTTCCTGGCATTGAGCTCTCCTTGCCAGCTCTCCCCGGGTTGGAGTATCCTGACCCTGGAGGCTCGGGTTTGCATGTCCCAGTTCTGGGAGCTCAGTTAGACTGGGTGTCAGGATGCATGGTGCCTCTAGCAGGAACCATGGAGGATGCAGATGGTAAAGGGCTAGTTCCCATACGTTTTGGAGCTCAGACTGTGGACCCTGTGACAGGGGTGCTGGCTCTGGTTGTGGGGGCCAGTCTGGATGTTTGGAAACGGACTGTGGTTCCTGTAACTGTGTCCCAGATTCTGACATTAGGAGAGAATCCAGACAGTGTCACGGTGGAAGCCCTCCAGAAGGAGAGCAATGTACGGGGCAATTACTGGCGTGAGCAGACACTGAAGGAAGAGGAGATGGTGGGAGATTTTGACAGAGCCTTTAAACACCATCTCTCCACATTCGTACACGTCTCTGACTGTATAGACTGGATGGACACAGACAGGCAGCTCAGGGAGACCGCCGCTGAGATTCAGGAAAGCGCTCAGTGTGAGGCCCGGAGAAAAGTTCTCCAGATCTCAGAGTTATCGCTGCTCCTACCAGGCCATGTCTTACACGCTCTCACAGGAGGAGACGAGGAGGAGTGGGAGCAGCAGTGTTACTGGCACACCGAGCTTAAGGTCGTGCTAAACCGAGTGAGTGTGTCCATGGAGAGACTGCGGAGGGACCGGGCTCAGCTGTCGGCACAGGAAACGCAGCATCTGGATGGAGAACTGAGGGAGCAGGAACTGTGGGAGCAATTAATGCAGAGACAAGCAGAGCTGGATGCTGTGCTTTCTTCTCTCCTCTGTGCTCGTCAGGCCTGCCAGCTGCGTGCTGACACCGCGCAGTCTTTGGTTTCTGGCACATTCTGGTATAAGGATTTTGGCGTACTGCAGCCCAAGGGTGTTAGAAACCCTTTGAAAGCAGTAGCCATGACTCAGCAGAAAATCCTTCCTCGGCTTGAACGACTTATTCAGCTGTTGGAGGAAAGCAAAGCACTTGACCAGTCGATCAGCACACAGCGACAGCAGAGCTCTGgGAAGCAGGTGTTCGGCCGAGACAGCGCTTCCAGAGCATGGACCGAATCTGTGTCTGTTgtaaaagGTGTCTCAACTCAGTCCTTTAAAGATCAAATGAAGGCTTCATCTGCGAGTGAACAGAATGCCACGGtgccctctctttctctgtcaaaCCCATCTTACACTCAGAAAAGCCGGGAAAAAGCACGGCTGAACCACAACCAGGATGTCCAAGCTCTTCAGGAACCTGGTCTGTCCGCACACCTCAGTATGCCACCACTAGCAGCTGATGAAGGAAGTGGAGCAGCAGCTCAGGGATAGTGCCAGAGATAGAGGCCTTCTCAAGATCCAGCCCTCGGGTGCAGGGCGGTCATTCGTGGATTTCATGGATGCCCAGTGGGAGTGTGAGGGAGAGCTGATTCAAGTGAGCTCTGAAACACTCAACCCACGACAGCTTCTGCTCTACCAGCACGGACAGTTTCTCCTCCAGCATCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252655.1 lncRNA upstream 98468 12580364 ~ 12581802 (+) True LOC122358874
TU156557 lncRNA upstream 140828 12538531 ~ 12539442 (+) True G105987
TU156455 lncRNA upstream 298557 12366246 ~ 12381713 (+) False G105910
TU156456 lncRNA upstream 298557 12376679 ~ 12381713 (+) True G105910
TU156457 lncRNA upstream 314111 12363615 ~ 12366159 (+) True G105911
TU156842 lncRNA downstream 38452 12738051 ~ 12741077 (+) True G106161
TU156845 lncRNA downstream 38452 12738051 ~ 12741077 (+) False G106161
TU156859 lncRNA downstream 72196 12771795 ~ 12772070 (+) True G106171
TU156833 lncRNA downstream 73858 12773457 ~ 12780375 (+) True G106157
TU156914 lncRNA downstream 142578 12842177 ~ 12848414 (+) False spa17
XM_043259427.1 mRNA upstream 4748 12667231 ~ 12675522 (+) True LOC122359172
XM_043259428.1 mRNA upstream 4748 12667231 ~ 12675522 (+) False LOC122359172
XM_043259225.1 mRNA upstream 55613 12613981 ~ 12624657 (+) True ppp2r1bb
XM_043258308.1 mRNA upstream 76510 12601165 ~ 12603760 (+) False nkapd1
XM_043258366.1 mRNA downstream 3851 12703450 ~ 12716484 (+) True ttc12
XM_043259792.1 mRNA downstream 18461 12718060 ~ 12726273 (+) True LOC122359478
XM_043259793.1 mRNA downstream 18461 12718060 ~ 12723287 (+) False LOC122359478
XM_043259794.1 mRNA downstream 22435 12722034 ~ 12726273 (+) False LOC122359478
XM_043259795.1 mRNA downstream 28357 12727956 ~ 12733428 (+) True ankk1
unassigned_transcript_2151 other upstream 859638 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 1308343 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 1951875 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 2289670 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 2472818 10204839 ~ 10207452 (+) True G105248
TU156910 other downstream 142578 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 142578 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 142578 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 1216974 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2216906 14916505 ~ 14916883 (+) False tbx4

Expression Profile