RNA id: XM_043258280.1


Basic Information

Item Value
RNA id XM_043258280.1
length 2382
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC122358473
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11291353 ~ 11297720 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCTTACATGACGCTTCTGTTTAATGAGGACTAGCAGGTAAGAAGCCCGTTCCTCGGCCATTTGTTATCATAACAGTAAACGCGTGGCACTCGGCTTTATAACCGGACATCAGGATGGTGAGCAGTCAGGTAAAGGCCACAAGGCGCTATAAGCCACCTAAAGACTATCTGTGTGACGGGTCACCGCTGCCAGCAGAGCCTCCTTCTAACGCAGACGGATCGAATCTACCGGTACCGGCCCAGAATGCATCAGGGGGCAATAAAGCCAAGAGCAGCTGTCAAACAGgaccaaaaaaacacaagtcAGCTTCTGAAAAGAAGTACCTTGGAGTCCGAGTTAGAATGCCAGTGCGGGACATGCTCAGAAATATACGGATAGCCAATGGTATTGACCCTAAAGATCTGCagggaaaacatttaaagacatCTAAAGGGGATAAGAAACGAGTTAACACAGGTGGAAACCGGAGACGTTTTCTGAAGAAACCTCAAACCAAAAGCCTAGAGGAGCTTGCAATTATAGTAGAAGTGCTGGAGGAGGATCTCAAGACCTGTCAGTCAAACAGATTGCCAAACAAAAGCCCTTTGGCTTCATACTCTTCTGAGTCCTGGGTTGAAGATGCATCTCCACATGGTGTCATGAACACATATGGCCAGGAGAATGAGGTACCTTTGTCTCCAAGCTACTCTGTGCCCTCCGCAACCTCCCCTGTCCATTCGGTGTCCAGCTCCTACCCATCCCCTACTTACAGCCAGGGTGCCGATGTCTTCATGGGGGATCAGAAAGACTATAGCAGTTATGAGTCCGATAAATACAGGTATGATGATCTAAATGGAATAAACTCATGCGAATACCAGGTGCCTTCTCCCCAAGAGTCATTCAGCGCCAGTCCCAACCCAGAAGTCTGGGATGTTTCTTCTCAGAAGATGAACTATACACCATGGCCACATTCTCAGCAGGGAGAGTGGAGCAGTATGACCTTCTTCTGGACTCAAATGGAAAGAGAGGAGAATATGCTAAAAAACATATCTGACCAGGAGCTTCTTGCTGTAGACAAAAACGGAAGGATTCTTTTACACAGAGTTGTTGAAGAGGGAAAGAGATCCCTTGTGTACGTTATTGCCAGAAGGATGGCGGCTCTGAAGAAACTGGATATCAAAGATTCAGAGGGAAAGACTCCCCTTCATCTTGCTGCACAGAAGAATCAACACTTCATGGTGGCTGATTTGGTGTCACTTGGTGCAAATATCAATGTGAAGGACCGGTATGGGAAAACATGTCTTCATCTCAGTGCAGAAAATGGATATATTCGAGTGTTGGAGGTCCTGAAAGGTTTGATGACAAATGGCGTGTATATTAATTTGGAGGAAAGAGATGCAAACGGGCTCAGCGCGTTGCAGTGTGCGGCAGTCGCTCTCAACCACACGGTGCGCGAGCTGGAGCTGTGCGAGTCTGCAGGACGGGTCAGACTGCACACCCTTCTCAAGGAGCAGATGATGGAGACGCTAGAGTGCCTCCTTCAAATGGAGTGCTGTTTACACGCTCCGgcCAGAAACAACGTGATTTAGGAGCGGTTCGGTTGTGGCTGCTTCGGAGTTGTTTTCTCTGTCAAGCCAGGCAGTGCTTTTAACTGACggtaaatgtttttgagtgaaTACAAGCTTTTACTTGCCGCTGAAGACTAAATGTACATACACGAAAGGAGGATGAGGATAGTCTTCAAGTCATGGTAAAGCTATGTATTATGCAACTGTAGATTTTGTTCAGTGTTCAGGTGAAAAGGgaggaacaaaaacacaacgGTTGCCCATTAGCTGGTTTCTGTGAAACTTCCACTGTTAGTTACATTTGAGtagcaaaatgtttaaaacagaatAGAACTGTGGTAAGACCTACGAGTCTGTCAAATACCACCATTCCTATTTGCTCCAAGAGCAAATAGTTTTGAGATTGATGTTACTGTAATGGTTATGTTTATTGCTGTACAAAACCGAAAGCAAAAAAACGTGTCAGCAGCGgaactgattttttttgatttgataatattttttcccaCTCTATTTTTCTCCGAATCTGACAacattttgacacaaaaagcatttttgtaattttgcttttgcgctaatgctaatgcatttacaacaaaaatacatacacattgCTGGTGTTATTTTCCCTTTTACAAAGCTGCCAATTAACATTTGAGATCAGTGTTTTAAGGACTTAATGGATCTATTCAGAAAGGACGcattaaagtgacagtaacaTATTTATCTGTCAAGCTATTCTTATAACGAtttctacaaaaacattaagcccTGAAACTgatttcagcattaataataataagtcttGTGCATAtaacaatgatttctgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155987 lncRNA upstream 106251 11180032 ~ 11185102 (+) True G105601
XR_006252685.1 lncRNA upstream 190926 11098854 ~ 11100427 (+) True LOC122359117
TU155881 lncRNA upstream 494976 10786021 ~ 10796377 (+) True G105550
TU155876 lncRNA upstream 505415 10779248 ~ 10785938 (+) True G105546
TU155865 lncRNA upstream 516000 10753433 ~ 10775353 (+) True G105539
TU156012 lncRNA downstream 32205 11329925 ~ 11330320 (+) True G105622
TU156014 lncRNA downstream 32700 11330420 ~ 11331300 (+) True G105623
TU156019 lncRNA downstream 40545 11338265 ~ 11338933 (+) True G105628
XR_006252604.1 lncRNA downstream 176708 11474428 ~ 11477539 (+) True LOC122358459
TU156043 lncRNA downstream 258158 11555878 ~ 11556298 (+) True G105650
XM_043258180.1 mRNA upstream 31972 11255323 ~ 11259381 (+) False LOC122358387
XM_043258181.1 mRNA upstream 31972 11255323 ~ 11259381 (+) False LOC122358387
XM_043258178.1 mRNA upstream 31972 11255909 ~ 11259381 (+) True LOC122358387
XM_043258179.1 mRNA upstream 31972 11255910 ~ 11259381 (+) False LOC122358387
XM_043259287.1 mRNA upstream 119150 11163360 ~ 11172203 (+) False LOC122359111
XM_043258505.1 mRNA downstream 72528 11370248 ~ 11372691 (+) True LOC122358628
XM_043259947.1 mRNA downstream 79685 11377405 ~ 11379430 (+) True LOC122359584
XM_043258213.1 mRNA downstream 260293 11558013 ~ 11566017 (+) True jam3a
XM_043259586.1 mRNA downstream 269670 11567390 ~ 11573448 (+) True vps26b
XM_043259967.1 mRNA downstream 277850 11575570 ~ 11579639 (+) True acad8
TU155825 other upstream 562958 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 900753 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 1083901 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 1180912 10093655 ~ 10110441 (+) False ypel2b
TU155072 other upstream 1618008 9669634 ~ 9673345 (+) True G105011
TU156035 other downstream 72916 11370636 ~ 11371927 (+) False LOC122358628
unassigned_transcript_2151 other downstream 522841 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 1544457 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 1544457 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 1544457 12842177 ~ 12847378 (+) False spa17

Expression Profile