RNA id: XM_043258326.1


Basic Information

Item Value
RNA id XM_043258326.1
length 2530
RNA type mRNA
GC content 0.45
exon number 19
gene id pde9ac
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12861778 ~ 12868653 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTTGAGATCTGGTCTTGGTGAATCTGCTCCTGGACAGAGGTACCAGGACAAGTAGCTCACAAGTTCATCTTGTCAACATGGGGTCTGGCTCCTCCTCTTATGCTCCCAAAACTATCTATTTGGATGTAGATGGTAAAGTGCAAAAGGTGCTTTTCAGTCGTCACTGCAGCCCTTGTGATATCAAAGAACTCCTGTGTTCCTCCTCCAACATCCCTAGGAACACTGCTATAATGATGGTGGACCCTGAAGGTGCACTTGTGTCCATTGATCCCACGATGCCCACCAACAACCCCAGCTCCCTGTACAAAGTCATTCCTTTGTCCACCGGCCAGCTGGGAGAAAAGGAAGATATGTTTCAGAATGTGCTCTCACAGGTAGCAGAGCAGTTCAGCAGAGCATTCAGGATCAACGAATTAAAAACGGAGGTGACCAACAGACTGGCTATGCTGGAGAAGAGAGTAGAACTGGAGGGGTTAAAGGTCGTGGAGATCGAAAAgtgcaaaaatgatttgaagAAGCTGAGAGACGAGATGACTTCCAGAGCAGGAGGAAGAGTGAATTGTCCATGCAAATACAATTTCTCCGATGACGGAAAGAAATTAACTCCTAGACGTGACGTGCCCAGCTACCCAAAGTACACACTTTCTCAGGAGACCATAGAAGCACTGAAGAAACCGACCTTTGATGTTTGGCACTGGGAGCACAATGAAATGCTGAGCTGCCTGGAGTACATGTACCATGACTTAGGCCTCGTGAAGGAGTTTAACATGAACCCGATTACTCTCAAACGCTGGCTGGAAAATTACCGCAGCAACCCGTTCCATAATTTCCGCCATTGTTTCTGCGTGAGTCAGATGATGTATGGCATGATCCACCTCTGCAACCTTCAGGAAAAGCTCACGCTGACAGATCTGGGCATTTTAATGACTGCTGCCGTGTGTCACGACTTAGACCACCCTGGATACAACAACACGTACCAGATCAATGCTCGCACTGAGTTGGCCGTGCGCTACAATGACATCTCGCCCCTGGAGAATCACCACTGCGCTGTGGCCTTCCAGATACTCTCACTGCCCGAGTGTAATATATTTGCAAACGTGGATCCAGAGGCCTTTAAACAGATCCGACAGGCTATCATCACGCTGATTTTGGCCACGGACATGGCCCGTCATGGCGAGATTCTAGACTCATTCAAGCATAAAGTAGACAATTTTGACTTCACCAATGAGGAGCATGTGACTTGCCTGAAGATGGTTCTTATCAAATGCTGTGACATTTCCAATGAAGTCCGGCCTACAGAGGTGGCAGAGCCGTGGGTGGACTGTCTGCTAGAGGAATATTTCATACAGAGTGATAGAGAGAAATCTGAGGGGCTTCCTGTGGCACCCTTCATGGACAGAGACAAAGTCACCAAGCCCACAGCCCAGATTGGCTTCATTAAATTTGTTCTCATCCCCATGTTTGAAACTGTCATGAAGCTCTTCCCTCAGATTGAAGAGATTATGGTTCAGCCTCTCAGAGACTCACGGGATCATTATGAGGAGCTGAAGCAAATTGATGATGCCATGACCGAGgcgcagaagaaaaaaacagaaaacatgtcattaggaggaaaaaagaaataaacactgatGTGACGATAATGACACTGTgAGTCTGATTTTTGAGCCGTCTGCTCTGGGTGGACAGAGTTCTGGCGCGAGGATCTGTGAGACGCTGGGCTGCTGTTGAAGACGCCTCGTTTGAATCCACTCAATATAAAGGGTCACCTGATCGACTCATCAAATCACAAGTGGCTTCCTTTTGCCAACagaatgctgttattttgttttgtcattaatcagtTATAAAGCCTTTTTTGGCTGACATGGGCATATCTATCACCAGTTTTAGTcctgtttgtttagtttttttattttacggtGTTCAACGGAAAAATTGCATTTCTATTGCATGAAAGGTTTGTGATCCCAAAGCAATTAGGACACCCGATTACAGCATGACGTATAACCGTAACTAGTGccttttgaaatgtgttttgatgtttatgAAAGGTCAGCATGATATGATACTGTTCCTTTTGTCCACTTTTTCTCTCCTGAGTTCCTCCAGAACACAGCAGTTCACAATACCGCTGTAAATCTGAATATCGGCTTTTAAGGAACCTGAGAACTCCCatcacagtgtttttattttcctgatTCCCAtgatttatttggtttttgaggttttaaatcaatgcatttcCATTAGAGCGTCCAAACAGATGATACGAGAGGTGCTTTTTAGTGTTCTGCTGAAGCACTCGAAGGAGCACAATTTTTGGGTCATCGTCTcttcaaatgaatcaatttCTTCTTACGCTCTCTGAAAGgtcataccagaagtcacacctGCTAACCATGTTCAATATTTCTATCCTTTGGCTCAATGTTCTCACCattttttgttctctgtatcCCATTTGCTCTGGTTTGCTTCCTCAAAATAAGACAATAAAGTCTGTGGGAGTTCTGCCTCCTGGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156915 lncRNA upstream 13111 12842177 ~ 12848667 (+) False spa17
TU156914 lncRNA upstream 13364 12842177 ~ 12848414 (+) False spa17
TU156833 lncRNA upstream 81403 12773457 ~ 12780375 (+) True G106157
TU156859 lncRNA upstream 89708 12771795 ~ 12772070 (+) True G106171
TU156845 lncRNA upstream 120701 12738051 ~ 12741077 (+) False G106161
XR_006252599.1 lncRNA downstream 76424 12945077 ~ 12955807 (+) True LOC122358384
TU156962 lncRNA downstream 389583 13258236 ~ 13798248 (+) True G106234
TU157016 lncRNA downstream 466655 13335308 ~ 13336677 (+) True G106276
TU157129 lncRNA downstream 811527 13680180 ~ 13685449 (+) True G106350
TU157134 lncRNA downstream 823726 13692379 ~ 13692893 (+) True G106354
XM_043259874.1 mRNA upstream 3278 12852856 ~ 12858500 (+) True hepacama
XM_043259875.1 mRNA upstream 14392 12837582 ~ 12847386 (+) True spa17
XM_043259795.1 mRNA upstream 128350 12727956 ~ 12733428 (+) True ankk1
XM_043259796.1 mRNA upstream 128350 12727956 ~ 12733428 (+) False ankk1
XM_043259794.1 mRNA upstream 135505 12722034 ~ 12726273 (+) False LOC122359478
XM_043259754.1 mRNA downstream 14364 12883017 ~ 12896981 (+) True oafa
XM_043258193.1 mRNA downstream 29394 12898047 ~ 12902460 (+) False tlcd5a
XM_043258194.1 mRNA downstream 29394 12898047 ~ 12902460 (+) False tlcd5a
XM_043258195.1 mRNA downstream 30327 12898980 ~ 12902460 (+) True tlcd5a
XM_043259170.1 mRNA downstream 34353 12903006 ~ 12942649 (+) True arhgef12a
TU156910 other upstream 14400 12842177 ~ 12847378 (+) False spa17
TU156912 other upstream 14400 12842177 ~ 12847378 (+) False spa17
TU156913 other upstream 14400 12842177 ~ 12847378 (+) False spa17
unassigned_transcript_2151 other upstream 1041146 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 1489851 11370636 ~ 11371927 (+) False LOC122358628
TU157171 other downstream 1047920 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2047852 14916505 ~ 14916883 (+) False tbx4
TU157786 other downstream 2052482 14921135 ~ 14925515 (+) False tbx4
TU157969 other downstream 2837860 15706513 ~ 15712439 (+) True G106937
TU157970 other downstream 2837860 15706513 ~ 15710209 (+) False G106937

Expression Profile