RNA id: XM_043258335.1


Basic Information

Item Value
RNA id XM_043258335.1
length 3146
RNA type mRNA
GC content 0.47
exon number 19
gene id atg16l1
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 23376578 ~ 23400826 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATACGACTGTAGAGCCAAAATGGCGTCCGTGATCCTTCAGTCAGGAGTGGGTTAGCATGAAACCTGTTCGATTAAACCTATTATGACACGGTTCGGCTCTTAATAGTCggattaatcatttttatcgTTAAGAAGAGTCCGTCTGAACTAGCGGAGACGCGTTTAGATCCTGTGAGgaggaGATGGCGGGCCGTAGAGTCGAGTGTTTGTGGAAACGTCATGTTGTGGAGCAGCTGAAACAGAGAGACCGAGTTCAGCGCCAGGCCTTTGAGGAGATCATACACCAGTATAACCGGTTGTTGGAGAAGTCTGATCTTCAGGTTGTGTTTTCTGAGCGCCTTCAGACCGAAAAATTTGAGCAACAGAACAGACACGACCTCAGtccGGGCGTAGAGGGCGGTCGCAGTGATTCCCTGCAACAGGAAATGGCTCAGATGAGAATTAAACATCAGGAGGAGCTGACGGAGCTGCACAAGAAACGAGGAGAGCTGGCCCAGAGCGTGATTGAACTAAACAACCAGATTCAGCagaaagacaaagagatccAGAGTAATGAAGccaaGATGCTGGAGTATCAGCAGCAGATCTCTCATCTGGAAGGAGAGTGTCGCGAGCTCCGCAACTCTCTGGCCGATCTGGAACGAGCCAATCAGACGCTGCGAGACGAGTACGACGCCCTGCAGATCACCTTCAGCGCCCTGGAGGAGAAACTACGGAAAACCACAGAGGACAATCAGGAGCTGGTGACGCGCTGGATGGCCGAGAAAGCGCAGGAGGCCAACAGACTCAACGCAGAGAACGAGAAGGACTCCAGGCGCAGGCAAGCGAAGCTTCAGAAGGAGTTGGCAGACGCAGCGAAGGAACCTCTTCCCATAGAGCCAGATGATGACATCGAAGTTCTCTCGGAGGATGCTGGGAAGGCAACGAGCGGGACCGGTGAAACGTCGCCGAGCAGACAGATCAGTCGCACGCCgagACGAGTGTCTCAGCCTCCTCCTCCGGCTGGACTGCTGGACTCCATCTCTAATATCTTCGGAAGACGTCGCTCGGTGAACTCGTTCGGCTCGTCTCCTGAGAGCGCAGAGGTTCCTCCGGCGTGCGCCGACGTCCGCGTTCCCTCCACCGCGCTGCACGTCTTCGACGCCCACGATGGAGAAGTGAACGCCGTCAGGTTCAGTCCCGGTTCTCGTCTGCTTGCCACGGGAGGCATGGACCGCAGGGTGAAGCTCTGGGAGGTCGTTTCTGGCCGATGTGAACCTAAAGGAGCGCTGACGGGCAGCAATGCCGGTATCACCAGTATAGAGTTTGATAGTGCGGGCTCGTATCTGTTGGCTGCGTCGAATGACTTTGCCAGCAGAATCTGGACGGTTGACGACTACAGACTGCGGCACACACTCACCGGGCACAGCGGGAAGGTTTTATCAGCTCGGTTTCTCCTCGATAACGCTCGAATCGTCTCCGGCAGCTACGATCGAACGCTCAAGCTCTGGGACCTACGCAGCAAAGTCTGCATGAAGACGGTGTTTGCTGGTTCTAGCTGTAATGATATCGTCTGCACGGAGCAGTGTGTGATGAGCGGACACTTCGATAAGAAAGTTCGTTTCTGGGACATCAGGGCGGAGAGTATCGTGCGTGAGCTGGAGTTACTGGGACGCGTTACGTCTTTGGACCTCAATCACGACCGGACTGAGCTGCTGACCTGCTCTCGTGACGATCTGGTGAAAATAATCGACCTGCGCAGCAATGCAGTGAGGCAGACGTTTAACGCTCAAGGTTTCAAGTGCGGTTCAGACTTTACCAGGGTCACGTTCAGtcCTGATGGTAGTTACGTGGCGGCCGGTTCTGCAGACGGCGTTCTGTACATCTGGAACGTTCTAACGGGAAAACTAGACAAAACTCTTGACAAGGGTCACAGTTCTGCCATAAACTCGGTGTCCTGGTCTCCCTCGGGCACGTACGTGGCCAGCGTCGAGAAAGGCAGCAAGGCCGTGCTCTGGTCTGACATGTGACCAGCCGCTCTCGTCCTCCGCAGCCCTGCCGTGATTGGATGAAACGGACTGTAAAGCCCGAAGGAAAGTGAGCCCACCCTCACGTCCCACTGGCCTCTTGAACTACTTTTCCCACAATGCCATCTGTTTGGCTGTCGGTGTACATGTGCTGCCTGCCTGTATGATCGGACAGCACCGTACACGcgttatacatatatttatatcagctTTCATGTACTGTCTGTCTCTCACGCTCTATGTGAGGTGATGGAGATTACACAAGTGACTGTCACTGTCCTACACGACTCTTACTGCTTCTTCTAACACGGCTTTACAATAGTATTTGTGTCTCTGTCAGAGTTTATGCTTTGCCTTATACAGATACAGGCCAttaagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaatgcAGTTCCACTTGAGCTCTATGAATGGCACTGTTCACTAAATATTTTTCGTAGAGTGAAAATCGCACATTTCCCTTTTTACAGtctttaataaaatgcacatacaGCAACCCAATTTAATATAAGACGAACCtcacaaatataacatttttctcataagataaaaataaaacatttatcttaaaATGGTGACATGGTGTTTAAACGAtgctttgcattgtttttttttgtttgtttttttcacatttatctctcattttaattattgtacaAAAAATTCTCATACTGTTATAGTAAAAATCATTCAGTCcacaatgttttattcaaaactgCATAAATTATGGACACTACAACTGCTGttattatatagttataatataacgttttattaatttattttatcttttcatgCCACACAAATTATTTTGGATTGCTGTATTGAGTTTAGTTGAGAAAtgggatttaaaaaataatgtgtaaaataatccatgcctaaaataagtgaaaataatTTCACTATTGAAAAtcttatttctaataatattttctattaaagaGAATTTTGGGagaaaatgtttgaataaaaagCTGTGCACATGCAAAAGAATATCTTTAAACatatcaaacaaaaataaacatggcatgaaaactttttttttcctttttttcccaaaatgtttttttttttttttggggggggtgaAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161341 lncRNA upstream 10574 23353307 ~ 23374953 (+) True G109161
TU161292 lncRNA upstream 64901 23317182 ~ 23320626 (+) True G109131
TU161297 lncRNA upstream 118340 23264176 ~ 23267187 (+) False G109132
TU161299 lncRNA upstream 120340 23246775 ~ 23265187 (+) False G109132
TU161290 lncRNA upstream 141757 23243545 ~ 23243770 (+) True G109130
XM_043258341.1 mRNA upstream 423 23378710 ~ 23385104 (+) False cldn15lb
XM_043258339.1 mRNA upstream 423 23379107 ~ 23385104 (+) False cldn15lb
XM_043258338.1 mRNA upstream 423 23379108 ~ 23385104 (+) False cldn15lb
XM_043258340.1 mRNA upstream 423 23381091 ~ 23385104 (+) True cldn15lb
XM_043258337.1 mRNA upstream 7258 23372660 ~ 23378269 (+) True LOC122358508
XM_043258561.1 mRNA downstream 205941 23606767 ~ 23607600 (+) True LOC122358723
XM_043258562.1 mRNA downstream 208460 23609286 ~ 23610125 (+) True LOC122358724
TU161296 other upstream 114236 23264176 ~ 23271291 (+) True G109132
TU161085 other upstream 426157 22955747 ~ 22959370 (+) False msantd4
TU161070 other upstream 432014 22949140 ~ 22953513 (+) True G108990
TU160996 other upstream 607802 22775649 ~ 22777725 (+) True G108951
TU160427 other upstream 1647840 21736680 ~ 21737687 (+) True G108573
TU161399 other downstream 108606 23509432 ~ 23510315 (+) True G109193

Expression Profile