RNA id: XM_043258367.1


Basic Information

Item Value
RNA id XM_043258367.1
length 5390
RNA type mRNA
GC content 0.51
exon number 32
gene id megf6
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 19230638 ~ 19270908 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGGATACTAGCTCCAGGACTTCTAGGATGCTCGATGCATGGAGAAAAACCTTAGCGCTTCTATAAAGTTATATTAACTACAGCACCTCACTCGTGTATAATGAAGTGATCGGACACTTTAAAGTGGACGGTGGGCCCCCGGAACCTGCTGACCACAAGCCCTGAAGAGTGCTTGCTGCATGTGGATGCTGTGAACGATGTGCTGCTCCGTGGCGCTTCTGCTCtgcggtgtgtttgtgtgtctaaaCGGCGCAGCATCACTGGACCTGCAGCCCGACATGCCGAACGTGTGTGAGGAGCAGGAGATGTCTATGCTGGGGGTAAGGCAGCCATGTGTTCAAGCGTTTACTCGTATGGTGAAGGTGTGGAGGCAGGGCTGCTCTTCTCAGCGCTGGTGTATGGGCTACGAGAGGAGGACAGGGTATTATACAGTGTATAGGCAGGCATACAGTATGGAGATGCAAACCGTGTACAGGTGCTGCCCAGGGTGGATGCAGCGAGGGGAAGAGAGAGGCTGTCTGCATAGAGTGTGTTCCTCTGGCACCTGCTTTAACGGTGGGAAGTGCTCTGAGATGGGTGATCAGCTTTGTCAGTGTCCGGAAGGGTTTGAGGGAATGCGCTGCCAATACGATATAAACGAGTGTGCGGACAGTAACGGAGGATGTGAAGGCACGTGCTGTAACACTATTGGCAGTTTTTACTGCAGGTGTCCTGATGGCATGAAACTCGGAGCCGATGGGAAATCCTGCCAAGATAAAGATGAGTGTGAAGAGCTGAATGGTGGTTGTCAGCAGACATGTGTGAACACACTCGGTTCGTACCACTGTGAGTGCAGCCAGGGTTTCCGCATACATGCTGATGCTCACACATGCATAGCGGTGAACTCTTGTTCTGTGAAGAATGGCGGCTGTGAGCACAGGTGTGTGGATTTGGGGAATGAGCAGTATAAGTGTGAATGTCGCAGCAACTACCAGCTCAAAAGAGACGGCAAACACTGTGAATTGAAGGACCCCTGTAAGGAATATAACGGCGGTTGTGCTCATATCTGCGATAATGTGAATGGACAGGCGCAATGCAGCTGCAGATCAGGATTCAAAATGGGAGCTGACTTCAAGAGATGTGAAGACATAGATGAATGTGTGTCTGGTCAGACTAAATGCGCTCACGGCTGTGTTAACGTGCCAGGATCGTTCCGTTGTGTGTGTAACCCAGGATTCGAGCTGGGTGCTGATGGGAAACAGTGCTACCGTATAGAGATGGAGATTGTGAATGGCTGTGAGAAAAATAACGGGGGCTGCTCTCATCACTGTGAACACACCACCAGCGGGCCCCTGTGCTCCTGTAACCAAGGTTACCACCTCGCTGATGACCTCAAAACATGCTTAGACACTGATGAGTGTGAAAACGGGGAGGCATGCTGTAGTCACTACTGTAAGAATTACCCAGGAGGCTATGAGTGCGGCTGTAGACCTGGATACACACCCAACGGCTGCACATGTGATGACATTGACGAGTGTGTATCCGAGACGTCAGGATGTTCTCAGTACTGTGTGAACACGCTGGGATCCTATGAGTGTTTCTGTCAGGTGGGCTTCAGACTGGACTATGACCAGAAATCATGCTTATCTCTCTATGAGAGGGAAttagaggaggaggaagaggaagaggtcgTAGGCAGTGAAGATGAGCCGGAGGTTCTACGTTTGCCGGACTTGCTATTTCGTCGCCCCCCTCAGCTTCTGCATTACACCGCTGCTTTAAGTAGACCGTATGACGACGACACATACACTTACGACCCAGAACACCCACAAAACCTTGAACAGAGAAAGGAGCTGACCGTCGTCAGCAAGATTATGTGTGAGGAGGGATCATTCGGTGATGACTGCAGTGTGAGCTGTGAGGACTGTGCTAATGGAGGAGTGTGTGCGTCAGAGAGGgatcactgtgtgtgtgcacctggctGGACGGGGGTCACCTGTAATGACACTTGTGCTGAGGGCACATATGGAGTTCAGTGTaacagtctgtgtgtttgtaagaacgGGGGCCGCTGTGACCCAGTGACGGGGAAATGCTTGTGTCCTCCAGGGGTCCACGGTCTGCACTGTGAAAACGGTTGTCCACAGGCTTTCTACGGGAGGTTCTGTCGGAGGAGGTGCAACTGCCCCAATAATGGACGCTGCCATCGTCTGTATGGAGGGTGTCTTTGCACACCTGGCCTCTACGGCAAATTCTGCCACCTGCCATGTCCCAAATGGACCCACGGTGCGGGTTGCTCTGAAGAATGCAAATGTGTGCAGGAAAACTCTCTTTCTTGTGATCCACAAAAAGGCACCTGCATTTGTAAACCTGGTTACAGCGGTGACCACTGTCAGGGAGAATGTGATGACGGATACTACGGCCTTGGCTGCCTCGAGCGGTGTAACTGCACTGATGGTCAGCCGTGTGACCTTAAAACTGGAGAGTGCCAGAAGACGTGCCCAGCAGGATACCATGGAGAGAAATGCCAGCTGGTGTGTGAGGCAGGTTTTTGGGGTGTAGGCTGTGCCAGTGTGTGCCGGTGTGGCAGTACCCCAGTAACCTGTGAGGCCAGCAGTGggcgctgtgtgtgtgaggctggATACACCGGAGAGCAGTGTGACAAGAAGTGTCCTGAGGGCCATTATGGAGCAGAGTGTAAACAAGTATGCGAGTGTGAGAACGGAGCCGAATGTGACCACGTCAGCGGAGCTTGTACCTGTATCGCCGGCTGGATGGGATCACACTGTGAAAAGAGATGTCCTGTTGGGTTTTACGGGCAGGACTGTGTGCAGATGTGCCAGTGCGGGAACGAGGCCCAGTGTCACCACATCACAGGCGCCTGCCGCTGCACCCCCGGCTGGGCACCGCcgcaatgcattctggCTTGTCCTGCAGGTACATTTGGTCCCAACTGCAGTCAATCATGTGACTGCCACAACGGAGGGTCATGTGACCCGGTGAGTGGCCTGTGCAGGTGCACACCTGGGTGGACAGGAGCCAGCTGCCAACAGACCTGTGCATCTGGATGGTTCGGTAGGAACTGTGAGCAAGGATGCATCTGTCCAGGGGGCGTGGCCTGTGATCATGTGACGGGCAGATGTGGCTGCCCCGCAGGGTACACTGGGAACAGCTGTGAGACGAtgtGTCCTCAGGGCAGGTTCGGCCTGAACTGTTCTCAGACATGCACATGTTCTGGAGATCAGTACAGCTGTCATCATGTAACTGGGAAATGCACATGTCTACCTGGATACTACGGCAACCGCTGTCATCTGAGATGTCGAGAGGGCACCTACGGCCCGTACTGTAAGAAGAGGTGTAGATGTGCCAACGGAGGACAATGTGACTTCAGGACTGGCTCTTGCATCTGTCAGCCGGGATACTTGGGACCCAACTGCAGCACCAGTTGTCCTACAGGTCGCTACGGGAGAGACtgtgctcaggtgtgtttgtgtggagaGGGAGGACAGTGCCACCCAGAGACTGGGAGGTGTACCTGCGCTCCGGGTAGAACGGGACCTTACTGCGAACAAGTATGTCCTAGGGGGCGCTACGGAGCACAGTGTCGGAGTTTCTGTACGTGTGCAAACGGAGGCATGTGTGACTCTGTGAATGGGACATGTAGATGTGGCCTGGGCTGGACTGGGCAGCACTGcgaaaaagTTTGTGTCCCAGGTCGGTATGGTGTGAACTGTgagcaggagtgtgtgtgtcagaataACGGTACATGTGATCGCTTTACGGGATGCTGCTCATGTCCTTCCGGATACTACGGTCCCGCCTGTCAACACCGATGCCCAACTGGCTTTTTCGGTGAGCTCTGTGCTCAATCGTGTGACTGTAAACACGGGCACCTGTGTGATCACGTGACTGGACAGTGTGCGTGTCCTCCAGGTTATCAGGGTAACAAGTGTCAAAAACgttGTGATGATGGACGGTTTGGAGGTGATTGTGCAGAACTCTGTGAGTGTGACGGGGAACCCTGTGACCCGACCACTGGACGGTGTCTCTGTCCATCTGGAAAGACTGGAGAACGCTGCGAGAAAGTTTGTGACAGCAGGTTTTACGGTCCAGACTGTTCTTTCCGGTGTCAGTGTGCACACAGAGGTCAGTGTGACCAGCGCACAGGTCACTGCTCGTGTCCTCTCGCCTGGATGGGACCCACCTGTGAGGAAGGTGTTTCGGTAAATCATGTGACTTCCAAATTACAGAAGAGGCGACGGCGTATTTCTCACTCCTAATCCTGATAGAGTCcccaaacacgcacacacacgcacacacacacacacacacacacacacacagactcctgACATCCCAGCAGAAGCAAGTGGCAAGGGTTACTGAGTGTGTGAGGATGTATGTGACTTGTTATTATGGGTTTTTCCCCCAGACGAGCAAGCCACAGGAGAATTAGTACGAGGAAGCAATACCgaaatacacagacacacacaaacatcccCCTCTGGATGCACACAAGACCACTGACAGGCTGTCATTGAGAGTGTGAGCGCATGTGTATCTTTGGTGGAGGGACACATTATGGCTGTGACCGAGTGAATATTACACACAACATTGCGGACAAGTTTGATGCGACtaaaaaatgcttgttttttgcGTGCATGTTTGTGCATAAACTCGCTGTTTCTTATACGTCCCACATCAGACAATCGGCCGAATGCCCACCGAGCCAAGAAGCCAGACCGAACTTCTCTATTACAGGATCAGAGGGAAGGCTCAACCGCTCATTTCTATAATACATACCACAAATACACCACTAAAGTGGCACATCAGAATACAGCAACACTCTGGAGTTTCTGCCTTCCATACATGCCATACGCAGCCTAAAATTTACCTTGTAAACACACACCGAcactaaatttaaattttttttatgacgCCGTCTATAAATTCCTCTTTTATGGTACTTTTTTAAAGCGATATGTAGCATGAATCTGGAGCGTTTGTGCTATAGATATTTAAATCCATCTGGTTGGCTCGTGTGAGTGTGATGTATGTCCTGCAAAGCGATTCCCGTGACAGCCTGACTGTAAATATTCACAGTATTGTTACCCATCATTGTGCCATCTGAGGTAAATTGTTAAAGTGGAGCTGTCTGACAGGATTTAGAAACAATCTGATGATTGTAAACCGAACAGACAGTTCCTCCAAAAGACGTCTTACACGACAAACAATCCTAATCTTTATAAATCGCGGTGCTTAGCGCTCGCTCAACAgtcttttactgtaaaaaaaaaatgctgtaaaaagtgttttgttgtttctctGTTCTTCTTTTGTCCCTCTCAGGATGTTATCAAAGTAAAGTTAAATTTCGCTGTACAGTGAAAATATGTATTGGTGCTTAagc

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159523 lncRNA upstream 3256 19222740 ~ 19227382 (+) True G108011
TU159501 lncRNA upstream 9586 19171887 ~ 19221052 (+) True G107996
TU159507 lncRNA upstream 12541 19216881 ~ 19218097 (+) True G107999
TU159305 lncRNA upstream 271863 18956820 ~ 18958775 (+) True G107866
TU159314 lncRNA upstream 282023 18948395 ~ 18948615 (+) True G107874
TU159627 lncRNA downstream 217318 19488226 ~ 19535847 (+) True G108055
TU159632 lncRNA downstream 244073 19514981 ~ 19517474 (+) False G108058
TU159633 lncRNA downstream 244073 19514981 ~ 19517474 (+) True G108058
TU159737 lncRNA downstream 418255 19689163 ~ 19689951 (+) True G108124
TU159770 lncRNA downstream 459831 19730739 ~ 19735234 (+) True G108154
XM_043258156.1 mRNA upstream 38147 19186956 ~ 19192491 (+) False slc19a3a
XM_043258157.1 mRNA upstream 38150 19186942 ~ 19192488 (+) False slc19a3a
XM_043258155.1 mRNA upstream 38150 19186956 ~ 19192488 (+) True slc19a3a
XM_043258158.1 mRNA upstream 38150 19186967 ~ 19192488 (+) False slc19a3a
XM_043258159.1 mRNA upstream 38150 19186990 ~ 19192488 (+) False slc19a3a
XM_043259863.1 mRNA downstream 163146 19434054 ~ 19469421 (+) True nyap2a
XM_043258254.1 mRNA downstream 239438 19510346 ~ 19514482 (+) True rhbdd1
XM_043259002.1 mRNA downstream 279792 19550700 ~ 19578860 (+) True col4a3
XM_043259433.1 mRNA downstream 309631 19580539 ~ 19582015 (+) True sst1.2
XM_043258322.1 mRNA downstream 324097 19595005 ~ 19596303 (+) True sst1.1
XR_006252666.1 other upstream 234678 18993345 ~ 18995960 (+) True LOC122358990
XR_006252667.1 other upstream 234678 18993345 ~ 18995960 (+) False LOC122358990
TU159167 other upstream 386783 18842276 ~ 18843855 (+) True G107777
TU159161 other upstream 434656 18794080 ~ 18795982 (+) True si:dkey-30e9.6
TU159144 other upstream 470141 18759582 ~ 18760497 (+) True G107757
unassigned_transcript_2152 other downstream 154209 19425117 ~ 19425189 (+) True trnav-aac_27
TU159761 other downstream 450376 19721284 ~ 19774385 (+) True si:dkey-262k9.2
TU159763 other downstream 472463 19743371 ~ 19774385 (+) False si:dkey-262k9.2
TU159893 other downstream 913212 20184120 ~ 20186861 (+) False G108245
TU159895 other downstream 913212 20184120 ~ 20249972 (+) False G108245

Expression Profile