RNA id: XM_043258450.1


Basic Information

Item Value
RNA id XM_043258450.1
length 1526
RNA type mRNA
GC content 0.48
exon number 8
gene id tekt1
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 18721289 ~ 18724361 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTACTACTCGCCGGCAGATTGTCAGCAGCGGTCGTGTTTTATTGAGTTTATACATAAGCATTTATATCTGAAAGAAAATAATGTCTCGGCTGATGGGACCCCCTGAGAAGTTCCTGCCGTCTGAGTGGAAACATGCAAACCAGGTGCATTTCAGGAGCTCGGAGGCTGAACGATCACTCTCACAGAGACTGACAGCAGAGTGTCAAAGACTCATAGAGGAGAGTGACAGATCTACCAAGCGCATGCAACAGGACGCACAAAATAAGCTGGAGCAGAGAATCCAGGACATCAAATACTGGAAGCAGGAACTGGACCAGAAGTTTGAGGAGATGGTGCAGGAGATTGAGACCCTCGTCGTTTTTAAGAGCCGCGTGGAAAGGGCTTTAGAAAGCTGCTCTGAGCCTTTTCAAGTGACTTTGCAGTGTCTGGCTGAGAGACAGAAGCGGGTGGCGATTGACCTTGTGCATGATGAGGTGGAAGAGGAGCTGTTGAAGGAGAAGGAGGTGATTGAAGGAGTGATGGTCCTGCTTCAGCGAACACTGGAGCAGATCAATGAGCAGATCAGgCTCATTCGTTCAGTGAAATACTATCTGGAAAAGGACTTGCAGGACAAATTTCAGGCCGAGCGCATCGATGATTTCTGTGCCCTTCTCACCAATTCGTCGCCCAGCGTAAAAGGAGGGAATTTAGCAGATTTTAGCAGTGTTGGAACTGAAGTGACTCCTGAGGAGTGGGAGAGCCTCTGCATCTTAAACATAAGCAAAGCCGAGAAGGAGAAGAACAACTCTCTTTCTCTGAGAGCTCTCGTGGACAGCCTGCTGGAGCAGACGGCTGCAGACATGCGCAGACAGTACGAGGCCGCGGGAAGAGCTTTTGAGCTCCGCATAGAGGAGGCCAAAACTGCCAAAACACAGCTTGAGAGCCAGCTCAGTGAGCTGCTAGCGGAGACAGCAAATCAAGAGAAAAATCTGGAGTCTTTACGAGTGGCAGTGGCAGAGAAAGAAGCTCCGCTCAAAGTGGCTCAGACTCGACTGTCCTCTCGCAGCCAGAGGCCCAACGTTGAGCTCTGCCATGACCCTGCTCAAATCCGCCTGCTGAAAGAGGTCAAGGAGCTCGCAAACCACATTGAGAGGCTGACTGAGGCACTTAGACTGTCAGAGATGGAGCTGAAAGCTCTAGCAAGACGCCAGTTGAGCTTGGAGGAGGAGATCCAGGTCAAGACCAGCTCCCTGTACATAGACGAGGTGATCTGCCATCAGCTACGTCAGCCTGTGGTTATTCACAACTTCTGAAGAAGGCCTAgtatatttaattgtgttttaaaaaaagagtttccTTTAAATAATGCCGTGTCATTTTGATGGGTTCAAAACTGGGATGTTTCCTCATCCATCTGCTTTGGTTTGTCTGTTTATTCCATCATTCAAAGAGACTGTTTgatatgtaaaagaaaaaaaaacatacaaaaggtaaaataaaaaaaatatatactatccTAAGGCTCACAAGTTACTTAGTTCTTGT

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005874 microtubule cellular_component

KEGG:

id description
K18628 TEKT1; tektin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159080 lncRNA upstream 45392 18670330 ~ 18675897 (+) True G107713
TU159046 lncRNA upstream 161534 18559480 ~ 18559755 (+) True G107693
TU159042 lncRNA upstream 186950 18533549 ~ 18534339 (+) True G107689
TU159041 lncRNA upstream 195056 18525605 ~ 18526233 (+) True G107688
XR_006252642.1 lncRNA upstream 277876 18442695 ~ 18443413 (+) True LOC122358786
TU159138 lncRNA downstream 20248 18744606 ~ 18747021 (+) True G107752
XR_006252624.1 lncRNA downstream 83900 18808258 ~ 18835601 (+) True LOC122358548
TU159163 lncRNA downstream 88164 18812522 ~ 18838720 (+) True G107774
TU159310 lncRNA downstream 220915 18945273 ~ 18945552 (+) True G107870
TU159311 lncRNA downstream 222179 18946537 ~ 18946881 (+) True G107871
XM_043258445.1 mRNA upstream 432 18712465 ~ 18720857 (+) True inpp5ka
XM_043258446.1 mRNA upstream 432 18712465 ~ 18720857 (+) False inpp5ka
XM_043258444.1 mRNA upstream 432 18712465 ~ 18720857 (+) False inpp5ka
XM_043258447.1 mRNA upstream 432 18712465 ~ 18720857 (+) False inpp5ka
XM_043258673.1 mRNA upstream 324581 18388927 ~ 18396708 (+) True mab21l1
XM_043258453.1 mRNA downstream 165 18724523 ~ 18727556 (+) True LOC122358577
XM_043258452.1 mRNA downstream 3333 18727691 ~ 18734238 (+) True LOC122358576
XM_043259866.1 mRNA downstream 42494 18766852 ~ 18770394 (+) True tmem106ba
XM_043259867.1 mRNA downstream 42495 18766853 ~ 18770394 (+) False tmem106ba
XM_043258153.1 mRNA downstream 47900 18772258 ~ 18774650 (+) True vwde
TU158844 other upstream 604336 17832072 ~ 18116953 (+) True G107558
TU158878 other upstream 674385 18045017 ~ 18046904 (+) True G107574
TU158879 other upstream 675255 18045017 ~ 18046034 (+) False G107574
TU158847 other upstream 860636 17859911 ~ 17860653 (+) False G107558
TU158422 other upstream 2207129 16513320 ~ 16514160 (+) False lyrm9
TU159142 other downstream 31985 18756343 ~ 18758836 (+) True G107756
TU159144 other downstream 35224 18759582 ~ 18760497 (+) True G107757
TU159161 other downstream 69722 18794080 ~ 18795982 (+) True si:dkey-30e9.6
TU159167 other downstream 117918 18842276 ~ 18843855 (+) True G107777
XR_006252666.1 other downstream 268987 18993345 ~ 18995960 (+) True LOC122358990

Expression Profile