RNA id: XM_043258534.1


Basic Information

Item Value
RNA id XM_043258534.1
length 948
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC122358675
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17434652 ~ 17435599 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCAGTCACTAACTCCTCTCAAATCACTGAATTCTACCTGCTGGGATTTCAAGAACTCCATCCACAGTATTATGGGGCTGTGGGGACCTTTTTGCTCTTTCTCTATGTAATACTGGCAGGCggaaacattttaatcatttcatttattgtttatgaGAGAAGTCTTCATAAACCCACTTACATAATCTTCTGTAATCTAGCAGTGTGTGATCTTTTGTTTGGAAGCGTCATTCTGCCCAGAGCAGCTGCAAAGTATCTTGCCAACAATGACTATGTGCCATTTCATATATGTTTGGTGCAGATGTTTTTTGCTCATTACTTAGGGACggttaattcatttattttactattaatggCCCTGGATAGGTTTGTAGCAATATGCTACCCTCTTCAGTATCCAGCTATTATCACAAACAAGCATATTGCATATGCGGGCACAGTGTGTTGGTTGTTCATTTTAGGATGGTTACCGCTACTTACGTACCAAACTGAAAAGCTTCCCTTTTGTACTACGAACGTAATAAATCAATGTTTCTGTGATTTCAATTCATTAGCTAAAATTGGCTGTGGAGATAAGACTGAGCTGAGGAGAAATGCTCTAGCCGTTGCATTGTTTGTTCTTTTAGGCCCACTAATATTCATCATATTTTCATACTTTGCCATCATCCGATCTGTATATAAACTCTCAAGTGTTCAGGCccgatttaaaacattttccacaTGCACCCCTCAGCTTTCAATCATATGCCTTTACTTTTTGCCTagatgtactgtgtatatatgtgacGTAACGACTGAAATATCTACAGGTGTTCGGATTATACTTGTTATGTGTTACAGTATTCTCCCGCCTGTTGTTAACCCATTGATTTACTGTTTAAGAACTCAGGAAATCAAGGCAGTCTTCATGAAGAGAATCAGAGGGAAAAAGTCAACCTTCAGCTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158701 lncRNA upstream 119991 17309345 ~ 17314661 (+) True G107447
TU158696 lncRNA upstream 233715 17200408 ~ 17200937 (+) True G107443
TU158686 lncRNA upstream 235039 17198455 ~ 17199613 (+) True G107440
TU158688 lncRNA upstream 235039 17198753 ~ 17199613 (+) False G107440
TU158683 lncRNA upstream 236322 17196154 ~ 17198330 (+) True G107438
TU158706 lncRNA downstream 18695 17454294 ~ 17457686 (+) True G107450
TU158729 lncRNA downstream 44249 17479848 ~ 17480048 (+) True G107468
TU158739 lncRNA downstream 130594 17566193 ~ 17566876 (+) True G107477
TU158831 lncRNA downstream 374734 17810333 ~ 17811203 (+) False trim3a
TU158832 lncRNA downstream 380533 17816132 ~ 17816825 (+) True G107547
XM_043258533.1 mRNA upstream 1412 17432251 ~ 17433240 (+) True LOC122358674
XM_043259760.1 mRNA upstream 4521 17429181 ~ 17430131 (+) True LOC122359453
XM_043259575.1 mRNA upstream 9180 17424511 ~ 17425472 (+) True LOC122359267
XM_043259799.1 mRNA upstream 19671 17414019 ~ 17414981 (+) True LOC122359481
XM_043259583.1 mRNA upstream 32905 17400734 ~ 17401747 (+) True LOC122359275
XM_043258396.1 mRNA downstream 24828 17460427 ~ 17463123 (+) True LOC122358547
XM_043258535.1 mRNA downstream 27704 17463303 ~ 17478201 (+) True wdr95
XM_043259698.1 mRNA downstream 53851 17489450 ~ 17549642 (+) True b3glcta
XM_043259694.1 mRNA downstream 114177 17549776 ~ 17566071 (+) True rxfp2b
XM_043259696.1 mRNA downstream 114177 17549776 ~ 17566071 (+) False rxfp2b
TU158422 other upstream 920492 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 1198311 16089757 ~ 16236341 (+) True G107148
XR_006252631.1 other upstream 1391387 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other upstream 1391387 16004870 ~ 16043265 (+) False gdpd5b
TU158204 other upstream 1551142 15881114 ~ 15883510 (+) True G107107
TU158844 other downstream 396473 17832072 ~ 18116953 (+) True G107558
TU158847 other downstream 424312 17859911 ~ 17860653 (+) False G107558
TU158878 other downstream 609418 18045017 ~ 18046904 (+) True G107574
TU158879 other downstream 609418 18045017 ~ 18046034 (+) False G107574
TU159142 other downstream 1320744 18756343 ~ 18758836 (+) True G107756

Expression Profile