RNA id: XM_043258551.1


Basic Information

Item Value
RNA id XM_043258551.1
length 3188
RNA type mRNA
GC content 0.54
exon number 16
gene id clstn2b
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 21842663 ~ 22014307 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTGTAAGTGCTGTGAAAGCCTCGGTGAAATCTGTGGCTTTCACGTGCAGGGTCTCAGCGCTCCGTTCGAGGCCGTGGTTCTGAACCGTACGTCAGGGGAGGGCCGTCTGCGAGCGCGTGGACTGATCGActgcgagagacagagagagttcACCTTCATCATTCAGGCTCACGACTGCGGCACGGGGCCGGAGGGACACGCGGAGAAGAGATCACACaaGGCCGTGGTGCGTGTGCAGGTGGGAGACGTGAACGAGTTTTCTCCGGTGTTCGCTCAGCTGGAGTATCACGGCTCGGTGACGGAGGGCAAGGTGTATGACAGCATTGTGCAGGTGCAGGCGTCGGACCAGGACTGCTCTCCTCAATACAGCCAGATCTGCAACTACCAGATCACCTCTCAGGACGCAGCCTTCGCCATAGACCGCAACGGTAACATCAGGAACACGGAGAGCCTGAGCTTTGATAAGATGTCGCATTACAAAATCCGCGTGACGGCGCTCGACTGCGGTCAGAAGAGAGCGGCGCGGGACGCCGTCGTGCACATCCACGTCAAGCCTGTATGCAAGCCCGGATGGCAGGgCTGGAGCAAGCTGGTTGACTACGAACCGGGGACGGGCAGTAAGCTGTTATTTCCCAAGATGCACCTGGAGACGTGTGCGGGGTCGGTGTCGTGGATCAGGACCACGGTGGAGCTGGAGACCAGCGGTGCCGGGAGAGGCTGTGACAGACAGTCTTACTCTGAGCGCTCCTTACAGAAGCTCTGCGGAGCCTCATCAGGCAGCACAGATCTTCTGCCGGCCCCCAGCGGTGTTTTTAATTGGACGGCGACTCTTGTGACGGACGGCGGCCTGGACAGTGACCTCACATACCGCTTTGATGGTCGTCAAGCTGCCAAGATCCCAGACTGGGTCGTACTGCAGAATCTAACCCATCAGTTTACCATAACCACGTGGATGAAGCACGGGCCGAGTCCAGGACAGAGAGCCGAGAAAGAAACGCTGCTCTGCAACTCTGACAAAACAGAGATGAACCGACACCATTACTCTCTGTACGTGCATAACTGCAGGCTGGTTTTCCTGCTGAGGACGGactacacacagacagactccTTCAGACCGGCCGAATTCCACTGGAAATTAGAGCAGatCTGTGATAAGGAGTGGCATTATTACGTCATCAGCGTTGATTTCCCAGTGGTGTCTCTGTATGTGGACGGCGTGACCTATGACCCGTATCTGGTGACGGACGACTGGCCCATCCACTCGTCTCAGATCGACGTGCAGCTCACCGTAGGAGCCTGCTGGCAAGgtgGTGAGGTCTCTAAAGCAAAGTTTACGCAGTATTTCAGAGGCAGTTTGTCTGGACTCACGGTACGAGCAGGAAAGATGGAAAGCCAGAAGATCATCTCCTGCCTACAGGCCTGCAAAGAAGGACTGGACATCACCTCACTGGAAAACCTCGGACAGAGGATAAAGTTTCATCTGAATCCCGCTCAGTCTCTGGTGGTGATGGAGGGAGAGGATCTGGAGGATCTGAACGCCGCACTGAGAAAAGTTTCTTACATCAACTCTCGGCAGTTTCCCACCAAGGGAGCCCGTCACCTCCGGATCTCCACGGCAGTGCAGTGTTTCGGAGAGGATGTGTGTATTTCTGTCCCTGATATCGAGGCGGTTGTCATGGTGATGCAACCGAGTGAACCACGCATCACCATCGCCGGGGCGGAGCACCTGACTGTCCCCGCCTCCGACCTTGCCCTCGGCCTATCCCTGTTCAGAGATTTGCATATCATCAGCACAGTAACAAAAAGCGACGAACAGACAAACGCAGATCAGAGCTCAGGTGCATTTAAGGAAATCCCGCATAATCTGGACTACTGTGACATCATCGTGCTGGGGGAGGAGTTAAGGGCGGGGCTAGAGAGTCTGGAACTGCACCACAGCTCCTTATTGGGCAAACACTTGGAATACGCCAACTCCAGCACCGGCATGTCCATATACGGTGTGGACTCCATCTCTCACTACACCGAGGTGATCAGACAGGTGCGTTATCAGAGCCGTCATGCTGTCGACTCGGTCCGCACCTTCAGACTCACCTGTTCGGAGCTCAACGGGCGTTACACCAGCGATCAGTACACATTACAGGTTAACATCCTTCACAGTGAGGAAGCTACTGAACATGTCAATCACGTCATGGCTCCGCCCAAATTCATGCAAATGATTCATCCTACAGTCATAGAGTCTGACAGATACGGCTTAGTCGTTCCTGCCGTTGCTACTGCAGTCATTGTGCTGTGTGTCGCCGCCCTGCTGGTGGTGCTGCTGAGTGTCTACCGCCTCAACCAACCACAAAACCAGGAGCTCATTCGCACACACGCGCTGCCGGAGAAACAAGCAGGCCGTGACGGATCCTCTCTCTCCATCACTGTCAACCCTCTGGAGCGCTTTCACGAGCTTCAGTCCGCGGAAGAAGCGACCGAGGAGGAAGGAGACGAGGAAGAGGACTGCACTGACTCGGACAGCGACGAAGAAGAAACCACCACGTCTTTCATGCTCCATCAAACCCGGATGCAACGAGCAGCGTCGTCGTCGTTACACTGAAAACAgctccacacaaacacaacgcTCTACCTGTAGCATCATCTAGTGACCTGCAATACACGCGAGTCGACGTGAAAGACCTCGAAACAGCTCCGATCCTTCGTGACACTGTTTTTGGCGTGAGGTGACCAACTAATAGAAGTCCCGCATCCCGTCCGATCCCTTTACGCTCTCCGTCTCTACCGCCGGAGgaccaaaacaaaacacgaGACAGAAGAAACTTCCGAGGCCTCTGCGGCGCATCTCGTTTTCTCTCTCAAACCCTTTCGGTGTGCAACGATCGTCCCTTCATGATAACCGGCGTCCTCGAATACGTTTTTATAAATCCGTGCGTGCACCTTTTTAATGTAGTCTTTCTCCGTGGGTCTCTCTTCTGCGCACGTGGCGGCGTGTTTGCGCGCGAGAGAGGTTTTGTAAGTGACTGTTGTTTCGTTATTAAGTGAATGGGTTGTGCGTTCGTGCATCTTACCGACTAAACGGAATTTGCTCCTTTTTTCTGGTCGCTGCTGCACTTTCTTTACATGggtcaataaaaaaatgttttaagaaaccGGTCGCCtcgtttttcattcattcattcattaacagGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160422 lncRNA upstream 115093 21727060 ~ 21727570 (+) True G108569
TU160400 lncRNA upstream 225470 21616656 ~ 21617193 (+) True G108553
TU160232 lncRNA upstream 640154 21201387 ~ 21202509 (+) True G108427
TU160223 lncRNA upstream 652290 21072081 ~ 21190373 (+) True G108418
TU160192 lncRNA upstream 992748 20848722 ~ 20849915 (+) True G108394
TU160575 lncRNA downstream 11491 22025798 ~ 22026309 (+) True G108648
TU160590 lncRNA downstream 14130 22028437 ~ 22036838 (+) True G108654
TU160588 lncRNA downstream 16317 22030624 ~ 22036838 (+) False G108654
TU160589 lncRNA downstream 16317 22030624 ~ 22036838 (+) False G108654
TU160659 lncRNA downstream 163085 22177392 ~ 22178630 (+) True G108713
XM_043258726.1 mRNA upstream 9447 21791606 ~ 21833216 (+) True LOC122358818
XM_043258549.1 mRNA upstream 116397 21724404 ~ 21726266 (+) True LOC122358705
XM_043258913.1 mRNA upstream 118683 21715201 ~ 21723980 (+) True LOC122358927
XM_043258140.1 mRNA upstream 259756 21567245 ~ 21582907 (+) True mtnr1ba
XM_043259419.1 mRNA upstream 288123 21420083 ~ 21554540 (+) False fat3a
XM_043258731.1 mRNA downstream 37283 22051590 ~ 22065590 (+) False pxylp1
XM_043258732.1 mRNA downstream 41273 22055580 ~ 22065594 (+) True pxylp1
XM_043258742.1 mRNA downstream 152807 22167114 ~ 22174542 (+) True sgpp2
XM_043258716.1 mRNA downstream 169241 22183548 ~ 22205101 (+) True scaf4b
XM_043258691.1 mRNA downstream 205903 22220210 ~ 22274827 (+) True tiam1b
TU160427 other upstream 104976 21736680 ~ 21737687 (+) True G108573
TU160426 other upstream 106945 21735014 ~ 21735718 (+) True G108572
TU160425 other upstream 109556 21731981 ~ 21733107 (+) True G108571
TU160418 other upstream 116489 21724555 ~ 21726174 (+) False LOC122358705
unassigned_transcript_2157 other upstream 587658 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160996 other downstream 761342 22775649 ~ 22777725 (+) True G108951
TU161070 other downstream 934833 22949140 ~ 22953513 (+) True G108990
TU161085 other downstream 941440 22955747 ~ 22959370 (+) False msantd4
TU161296 other downstream 1249869 23264176 ~ 23271291 (+) True G109132
XR_006252725.1 other downstream 1378448 23392755 ~ 23393038 (+) True LOC122359600

Expression Profile