RNA id: XM_043258598.1


Basic Information

Item Value
RNA id XM_043258598.1
length 6360
RNA type mRNA
GC content 0.47
exon number 24
gene id sgsm2
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12098635 ~ 12144191 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATAAAGGAGCCGAAGATGGCTTCACGATGCGCTACGGCAGGGCTTAGATGCGTCAACGCTCAGCTGTCAGTGCACACATTTATATGAAAAGGAAGGAAGGGTAGCGAAATACTGGGAGGAAGGCGGGCGAGCCGTTCAGATTTATGCCTCCAGCCAGTTTATGCTGCACTTGGCTTGTTTAACAGTCAGGGACAATGGGTTCGACTACAGATGAAGAATTTAAAGAGAAATTACTATGGAACGTCAAAAGAGAAGTGAAGCAGATCATGGAGGAGGCGGTGACCAAGAAGTTTGTTCATGAAGACAGCAGCCACATTATTGCACTTTGCAGCTCCATCGAGGCTTGCTTAAGTCACCTGTTGAAGCGAAGAGCGGCGGGATTCCTCCGCAGCGATAAGATCGCCGCCCTCTTCACCAAGATCGGCAAGGTCAACACCACCGCGAGTGAGATCTGCCGCAAGGTTCAAGAACAGCTACAGCAGCAGGCCGAAATCACCAGGAGAACCCAGAGCACAGGACAGGAGCCCCTCCGGAGACAGGGCTCTTCTGCTGGCCGAGCGCCTCAGCCACTCTCTGCCCAGGCCATCAAGCACATATGGGTCCGCACGGCCCTCTTTGAGAAAGTCCTGGACAAAATAGTGCAGTATATTGTGGACAATGCAAGtaAGTATTATGAAAAGGAGGCTCTCATGCACGACTCTGTGTTTGGCCCGATACTGGCGGGACTGCTGGTCGGGCCTTGCGCACTAGAGTACACTAAGCTCAAGACATCGGATCATTTCTGGACTGACCCATCAGCAAATGAGCTGGTCCAGAGGCATCGCATTCACGGGGCCCACAGGGGCCAAGAAGTGTCGCCGGGCCGCAGGCCTGCACTTGGGATCCGAAAGCGTCAGTCCTCTGGAAGCATGTCTGAGGACAAGTTTGCAGCCTCGGCCAGAGAGTACGTCGAATCCCTCCACCAAAACTCACGCATTCATTTACTCTACGGAAAAAACAATGTACTCGTTCAACCGAAGAAAGACATGGAGGTGCTGCGGGGTTACCTCTCCCTTCATCAGGCGGCCGAAACACTCACGCTGAAGTGGACGCCCAATCAGCTAATCAATGGCACTCTGGGAGACTGTGACTTGGAGAAGAgTATTTACTGGGACTACGCTTTGACTGTGCCTTTAAGACAGATTGTCTGCATACATTGTCACCAACGGCCGGACTGTGGGGGTACTCTGGTGTTAGTAAGTCAAGATGGGATCCAGCGGCCTCCTCTACACTTCCCTCCTGGGGGCCACCTGCTGGCTTTCCTGTCCTGTTTGGAGACGGGTTTACTTCCCCGGGGTCAGCTTGAGCCACCCCTTTGGTCCCAGAAAGGCAAGGGTAAAGTCTTCCCTAAGCTCCGTAAGAGGAACAGCACGGCCCGTTTAGTCGATCAGGATGGAGATGGAGAGGAGCAGATCGCTGCAGACTATGTGTTTCGCATCGTCTATCCAGGGCACCGTCACGACTCAATCACTATAAACTACCATCACACCACGGGCAGTCGTGCGCCCTCTCTGGACGacgatgaggaggaggaagatagACTTCACGCTATGATCTCTATGATCTGCTCACGGAACCTCACAGATCCTAATGTCATGAAAGTAGACCACGGGGACATGATGGAGATGCAGGGTTTTGGCGGCAGCCCGTTGTCATGGCAGCAGGGCGAGTGCACCAGTCATATGTCATCTTGTCTGTCCTGCTCCACTGGGGGCAGCAACGCTTCCGTCGAGCTTCCAGCCAGCTGTACCTGCATGCATGACCGTATTCCACTGAAGATGCTGTGCCAAAATATGAAGAGACAGATTGTGTCTCGAGCGTTTTATGGCTGGCTGGCCTACTGTCGGCACCTGTCCACTGTGAGAACGCACCTTTCAGCACTGGTCAACCACAACATTGTCCCTCCAGACAAGCCCTGTGAAGCCTCTGGAGGGCTCAGCAAAGATGTGTGGAGTAAATATCAGAAAGACTGTAAGAATTATAAGGAGCTGGAGCTGTTGAGGTTGGTTTACTACGGAGGGGTGGAGCATGAGATCAGAAAGGAGGTGTGGCCATTTCTGCTGGGTCACTACAAGTTTGGGATGGACAAGAAAGACATGGCTCAGATTGACGAGAAGATCACAGAGAGGTATCAGCAGGTGATGCGGGAGTGGAAGGCATGTGAGGTCATTGTGAAGCAGCGGGAAAAAGAGATGCAGTCGGCCATCTTTGCCAAGTTGTCGTCAGGGAGCAGTATAGACAGTCACGTCCTCAGACTCATCCATAGAGACTCCACCATTAGCAACGAGGTATTCATGTCCGTGGATGAGCCTGATGCAGGGGGTCACGACACCTCGTGTGAGGGAGGAAGTACTCCCACCTTAACCACTGTAGTTACCCCGGCCATGTTAGCCCCAGACGAGAGGCCACTGGTGGAGTTTGACTCTCCAGACTCAGGCCTGCCCTCCTCCAGGAACTACTCCGTAGCCTCTGGACATTCCCAGATCATGTCCAGCATCGATGACGGACAGAGCATGGAGGAGGACACTACGCCCACTGGAGTACTGGAGGAGCAGGGTGGACGGGACTCTCTGAGTGAGGACAAACTCTGCAGTCAGCTGGACAAACTCACAACCACCACTGAGGGCACTGCGCCATCCTTCTCCTCTTATACGATTGAGCTGTTGGACACGGTGGCACTGAACTTGCACAGAATAGACAAAGACGTCCAGCGCTGCGATCGTAACTACTATTACTTCACCTCCAGCAACCTGGAGAAACTGAGAAACATCATGTGCAGTTACGTGTGGGAACATCTGGAGATTGGCTATGTGCAAGGCATGTGTGACCTTCTAGCCCCGCTGATGGTCATTCTGGATGATGAGTGCTTGGCCTACAGCTGTTTCACTCAACTAATGAAAAGGATGAGTCAGAATTTCCCTACCGGAGGAGCCATGGACACTCATTTCGCCAATATGAGGTCACTAATACAGatCCTCGACTCAGAGTTGTTTGAGCTCATGCACCAGAATGGAGATTACACCCATTTCTATTTCTGCTACCGCTGGTTCCTCCTGGACTTCAAAAGAGAGCTACTCTATGAGGATGTGTTTGCAGTATGGGAGGTCATCTGGGTCGCCCCTCGCATCTCCTCCAAGCACTTTGTCCTGTTCATTGCACTGGCCTTGGTGGAGGTGTACAGGGACATTATCCTGGACAACAACATGGACTTCACtgatatcatcaagttttttaaCGAGATGGCCGAGCGCCACGACGTGCAGCACATCCTCCGAATAGCGCGGGAGCTGGTACACAAGGTGCAGACCCTTATCGAGAACAAGTGAGAATAAGAGTAGGCTGCCGCCCACCGAGTCCCGCCTGGCCAAACCTCCTCCTAAAGGCTTGAGACCGCCCAGGATCTGCCTCGACGTCTCGACTCTTAATATCGTTTGCCTGCCACAGAATGCCGTTGTGTCAGACCCTGGCGTTGTCTGCATGCTCGTGGTGTTTGAGCACACTGTGACTGaggtttttttcctttctcgCTGTACACGCCTCCAGCACACACCGCACCGATCAGGTCCTTTTAGATCTGCTTTTATAAGAAATGAGAAGCGTCGTACGGGTTGCCACAACCCTGTCCTTTCCCTGATGGCCGCCAAATGTACAGTAAGTATTCCACGATGAATAAAAAACGGCGTTGAGCACAGTTTTGAATCTTTAAACGAGGCTGCGTTACGTCAGCTCCCTTAAATAATATCTAAGCCACGAAGAAGTCGTCCAAACAGTGTGTGACCAAAAGGACTGTGCCAGTAACCTTGTGCTAGTATTTCTATGCCTCGTTTTAACGTTTCACGTCTCTATTGCCCCTTTTCTTCTCTGCGATGTTTCAGTTGATGGTGATGACGACGATGATCTTGGATTAAAAGTAGTTGACGTTGCCTTTGTAACACGTTTCACGACTTGCATCCATACGTTTGCACTTTGAATCTGTCGCCCCACGACACCCGTGATGCTCCTCGCTGACAGGTGTTATCTGGGGTCACTACAGTGTCCTAAAGTCTGGAAAGGGTCCAGGCTCTTCCACGAGTCAGAAAACTGCTTCCATGTGATGTGACGAGACTAACCGGTCTTTAGTGTGTCACATTTTAGACGCTCACTACCTTCAGGCTTTGTTCACCCTGCATATACTGCACACTACTAAAGATTGGGGTCGGTGagatttttgatcattttttctttagcaaggatgcattacagTGCCTCTGTTATGGAAAGGTTCATAGTTTTAGGTGTCCCCAACAGCATGCATGCTAATGCAAAGtccaaaaaaacttttattgtcttataatatgttAACTTATTTGTTCAAGGACTCCCAAACGATTTATTGAACGATTTATCTTTCCAAGCCGTTCCATTTGCAGTTATTTGTTGATTGGTCTCATCTTTTATTTCATCGTGTCTGTACTGCCTGATTAAAGCAGTGTTTACAGCCGCTACCGGAAACCGCTATTTTACCGCAATTTAAGCGgcatctagtggcaaagaatgaatttgcattttcattcaaaacaatgCTAAAAGACCAACATGTGGCAAGAGGGTGGGCAAGGATGTTTtcgttcacttagagctgtCAGACACGGCATGAAAGctatccataataggggcactgtaaattaatcaatttctgctttgaatgcttttttttttttttaaatagaaaaatgtatgcatgcttggttttcacaaaaatatctaataataaaagcagtttttaaagattatgtGATACCGAAGTCTGGAATCATGGCTGCTGGAAATTGAATTTAAAcggcatttaaaatatattcaaacaaaaacCAGTCATTTTAAACgatgataatatttcacaatattactgtttttattaaaaatgtgcagCAATGATAAGCACACGGTAATTCTTTAAAAGTAATCTTAATCTAATCTTACTGACCACAATCTTTTAAACCGTATTATACATCAATTTTGATCATTTTCCATATCCAATCTTTATTACCGATTATTCACTCTTGTCATTTTGCAAGTGATAAACTCTGATCATGTCCCGATTACGACTACTTAAAACTACTTGAATCTGATCTGACTGTTCAGAAATTGgattttaaatgagaaatgtcGCTAAATTCGACCTGTGTTATGGTCGTCTATCATCAAACGTGTCCTGTTAAAGAAACATTGCATAATAGTTGCACATTTTAAAGAGTAATTTACTTCCACACGGTCTTCCCCATCTTCCAAGTAATTAACGACCTGAGGCTGTTTGGAATCAAACACTAGTTGACTGAATACTTCACACAGtactgcaaaatatattttcttaaataaaacgtgaaataaatgcagcacgcAGTACGTGACATCCAAACGCCATTTTGGAAATGAAGCTTATTTGACGTTCTCTTCAAATGAATCAGCGATATTACATTGGTTTAACGGACTGTTAAGGCAAGCActttgcattgtgggatattaTACTCCGTGCAGTGTGCTGAAGTATACTACACATTTGGTCATCAGGGTATTTCACGCGTACAGACAGTTCACACATTAGCATGCATGCTGTATACTGCACAAATAGTACTAGTATGCTATTCCAAGCAGCCTAACCCCCcccaccaaaaaacaaaaagcaactgTACTTTTCTAACAGCTGACAGAGATTATGGAAGAAGTGGTCTTACGACGTGACTGTCAGTCACTGCCTCAAACCTTGTTGAATGCGTGCGAGTGCGAAGGATGTTTTAGCCCTCACGAAAGGTTTACTTCCGACAGGAGCTCATGTACCAAAGCCTCTAAAACATCTTCATCCTTGTCATACACGTGTGCCATGTTAAACCGCAACTCGAAGACTGTTGATTAGGTATAAAAGACAAATCATTTCTCTTCATTTCTACTGTGAGCCGTTTATTATCCTCCTTTACGTGTGTATTATTGCActgtaaataaagagaaaagccCTGGATTTCTACGAGGACACTACTGTCAGCTGTATTTCTCTCAGACTCTATTTTTTACTTTGGTTTCGGAGACTGTGCTAACCTGGAGAGCTGTACAATCTGAATGTGGGGAAACCTTTGTTACTTGTTGACTGTTATGTCCCTTATTAACGTTGTGCACCGGTTTCTAATCGTTTCaaatatatgtgtacattttttgttcGGGCACCAACATCAGAATGAAGTATGTATTGTAACGGATGTATCATTTACCTTGAATGTACATGTATTatggagacaaaaaaaaagttgttcctaaagattaaaacattttcatatgcagaaaaactta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156397 lncRNA upstream 989 12096904 ~ 12097646 (+) False tnfaip1
TU156396 lncRNA upstream 1138 12096904 ~ 12097497 (+) False tnfaip1
TU156398 lncRNA upstream 1178 12096904 ~ 12097457 (+) False tnfaip1
TU156393 lncRNA upstream 5482 12091854 ~ 12093153 (+) True G105870
TU156376 lncRNA upstream 27772 12070299 ~ 12070863 (+) True G105860
TU156408 lncRNA downstream 62217 12206408 ~ 12248991 (+) True G105880
TU156420 lncRNA downstream 107698 12251889 ~ 12252728 (+) True G105890
TU156437 lncRNA downstream 125440 12269631 ~ 12270174 (+) True G105901
TU156435 lncRNA downstream 126225 12270416 ~ 12274350 (+) True G105900
TU156436 lncRNA downstream 126225 12270416 ~ 12274040 (+) False G105900
XM_043258219.1 mRNA upstream 1129 12093957 ~ 12097506 (+) False tnfaip1
XM_043258220.1 mRNA upstream 1129 12093970 ~ 12097506 (+) False tnfaip1
XM_043258218.1 mRNA upstream 1129 12093986 ~ 12097506 (+) True tnfaip1
XM_043258590.1 mRNA upstream 68086 12027555 ~ 12030549 (+) True LOC122358755
XM_043258587.1 mRNA upstream 75457 12011232 ~ 12023178 (+) False supt5h
XM_043259389.1 mRNA downstream 71058 12215249 ~ 12243233 (+) False ulk2
XM_043259390.1 mRNA downstream 71058 12215249 ~ 12243233 (+) False ulk2
XM_043259388.1 mRNA downstream 71059 12215250 ~ 12243233 (+) True ulk2
XM_043259405.1 mRNA downstream 246943 12391134 ~ 12397148 (+) True usf1
XM_043259407.1 mRNA downstream 246943 12391134 ~ 12397148 (+) False usf1
unassigned_transcript_2151 other upstream 278003 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 726708 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 1370240 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1708035 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 1891183 10204839 ~ 10207452 (+) True G105248
TU156910 other downstream 697986 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 697986 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 697986 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 1772382 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2772314 14916505 ~ 14916883 (+) False tbx4

Expression Profile