RNA id: XM_043258633.1


Basic Information

Item Value
RNA id XM_043258633.1
length 1499
RNA type mRNA
GC content 0.41
exon number 8
gene id zgc:101731
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 15893397 ~ 15900634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACCAATCGGCTACATGAAGGGGCGTGGCCTGAGTTACCTGTGATGAAGACAACTGCCTGCTCGCGCTGAGTAGATGATGTGAAATCAGATCGATGAGCAAACAGGTGTTGAACAGAACGGCTTTGTCTTTGCGCCTTCCTCTGGAAAAATAACGCTTAAGCGTGTACCTGCTGTCATACACTAGGATGGCTGCCGACTCCACCATGAGATCTGAAgtggaggagctgcagaggaGGGCCAATCAGGTGACAGATGAGtcCCTTGAGATTACTAGAAACATGAGGCTCCTGTTGGAGGAGAGTAAAGATGCAGGGATCAGGACACTTGTTATGCTGGACGAGCAGGGAGAACAACTGGACCGCATAGAAGAGGGCCTGGATCAGATCAACAAGGACATGAAGGAGGCTGAGAAAAATCTCACTGACATGGCCAGGTGTTGCGGTCTGTGCATCTGGCCATGTACAAAACTGAAGGACTTTGAAGCAAGTGGGGCATATAAGAAGGTTTGGGGTAATAATCAAGATGGGGTGGTGTCCAGCCAGCCTTCTTCTCGAGTCGTGGATGAGAGGGAGAAGATGACCATGAGCGGTGGATATATTAGAAGAGTGACAAACGATGCTAGGGAGGATGAAATGGAGGAAAACTTGGCACAGGTTGGCAGTATCCTTGGCAACCTCAGAAGCATGGCACTTGACATGGGCAATGAAATCGACACTCAGAACGTCCAGATTGAACGCATTCAGAGCAAGgCCATGGTTAACGAATCCCGCATCAATGAGGCCAATCAGAGGGCCACAAAGCTAATATCAAGATAAAAACATTGGATTTTCCTTTGTGAAACGTTTACTGTCTTCTGTAGGAAAGTGTGTGCGCATTGATACAAATTaagttttatcttttaaatgacTATTTACAAAACTTGGATTATTGCCTATATGAGAGTAAGTTATGTTTCAACAACAGCTCTtcaatacaagaaaaaaatgaatgttaatagTCTGTgctgtaattgtaatttaagcATGTATTGTACAGTATAGGctacaaaaaaacatcttttagactatcttagtttttttttaagcctgcAGAACACTTTCCATGGCCGATAACAGCTCACTATTCAGACAAAGCAGTGTCTTAAAGTTGTATTGGTAAATGTAACATCTTTGTCTACCTGagtagctttttaaaaaataaatccaatttTAAAGTTCAAGGGTTCGTTCCCATGAtgaacaaaatgctttttttccctgcTATACACGGACCACTGGGTTCTACAaataatctttctttttattttaaaactaaaactatatattttttgtcattctgtGGAGCTGGCAACCTAAACGCCGTCttgattgtcttttttttcttttatgaaataaaactgaaggTTACTCGGTGTGGGACGTTTTATCAACTAACTAAACCAAAGTCAGCCAATTGTGAGTTTAAACGCACGAAGTTGAATAAATTAGAGTTTTAATTT

Function

GO:

id name namespace
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157978 lncRNA upstream 255368 15637174 ~ 15638029 (+) True G106941
TU157948 lncRNA upstream 322235 15502558 ~ 15571162 (+) True G106924
TU157952 lncRNA upstream 382287 15510317 ~ 15511110 (+) True G106926
TU157909 lncRNA upstream 410725 15397722 ~ 15482672 (+) True G106898
TU157869 lncRNA upstream 602234 15290829 ~ 15291163 (+) True G106873
TU158264 lncRNA downstream 99581 16000215 ~ 16002131 (+) True G107136
TU158271 lncRNA downstream 168850 16069484 ~ 16069741 (+) True G107141
TU158283 lncRNA downstream 189123 16089757 ~ 16115455 (+) False G107148
TU158276 lncRNA downstream 239179 16139813 ~ 16167005 (+) False G107145
TU158275 lncRNA downstream 246858 16147492 ~ 16167005 (+) True G107145
XM_043258631.1 mRNA upstream 147 15889354 ~ 15893250 (+) True capns1b
XM_043258620.1 mRNA upstream 15542 15872081 ~ 15877855 (+) True si:ch211-137a8.4
XM_043258212.1 mRNA upstream 27987 15845574 ~ 15865410 (+) True si:ch211-137a8.2
XM_043259882.1 mRNA upstream 55489 15826161 ~ 15837908 (+) True clip3
XM_043259883.1 mRNA upstream 55489 15826161 ~ 15837908 (+) False clip3
XM_043258624.1 mRNA downstream 660 15901294 ~ 15906396 (+) False zgc:113149
XM_043258623.1 mRNA downstream 661 15901295 ~ 15906396 (+) True zgc:113149
XM_043258613.1 mRNA downstream 9852 15910486 ~ 15969203 (+) False rap1gap2a
XM_043258614.1 mRNA downstream 12140 15912774 ~ 15969203 (+) True rap1gap2a
XM_043258610.1 mRNA downstream 15461 15916095 ~ 15969203 (+) False rap1gap2a
TU158204 other upstream 9887 15881114 ~ 15883510 (+) True G107107
TU157969 other upstream 180958 15706513 ~ 15712439 (+) True G106937
TU157970 other upstream 183188 15706513 ~ 15710209 (+) False G106937
TU157786 other upstream 967882 14921135 ~ 14925515 (+) False tbx4
TU157784 other upstream 976514 14916505 ~ 14916883 (+) False tbx4
XR_006252631.1 other downstream 104236 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other downstream 104236 16004870 ~ 16043265 (+) False gdpd5b
TU158282 other downstream 189123 16089757 ~ 16236341 (+) True G107148
TU158422 other downstream 612686 16513320 ~ 16514160 (+) False lyrm9
TU158844 other downstream 1931438 17832072 ~ 18116953 (+) True G107558

Expression Profile