RNA id: XM_043258709.1


Basic Information

Item Value
RNA id XM_043258709.1
length 5024
RNA type mRNA
GC content 0.47
exon number 22
gene id actn4
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22572491 ~ 22616753 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTCCTCCTCGGTGGGAGCGGCGCGTCTCCTACTCCATTTTTGTCAGACGGGTGGAGGAACGCACTCTCGGCGGGGATACTGTCAGTCCACGCAGCGGATACTTCACACCGAGCGACAAAAGGCTTTGAGGGCGACTACTGCAGCCGGTTTTCTTTTGGTTTGCGCTTAGGAAGAGTTTTGACGGTGCTCTCGGTTATCTGACATGGTAGATTATCACGCCGCCAATAATCAAACCCAGTATTCGACGGGAGGACAGCCGAGCTACATGGAGCAGGAGAACGACTGGGACCGGGACCTGCTGCTGGACCCGGCCTGGGAGAAGCAGCAGCGGAAGACTTTCACGGCCTGGTGCAACTCTCACCTGCGGAAGGCGGGAACGCAGATCGAAAACATCGAGGAGGATTTCAGAGATGGACTCAAACTCATGCTGCTCCTAGAGGTCATCTCAGGGGAGAGGTTACCTAAACCCGAAAGAGGCAAGATGAGAGTTCACAAGATCAACAACGTCAACAAAGCGCTGGACTTCATCGCCAGCAAAGGAGTCAAGCTGGTGTCTATTGGTGCAGAAGAAATCGTGGATGGAAACGCCAAGATGACTCTGGGAATGATTTGGACCATCATCCTTCGCTTCGCCATCCAGGACATCTCAGTGGAGGAAACCTCCGCTAAAGAAGGATTGTTGCTCTGGTGTCAGAGAAAGACGGCTCCTTACAAGAACGTCAACGTTCAGAACTTCCACATCAGCTGGAAGGATGGTCTCGCCTTCAATGCTCTGATCCACAGACACAGGCCAGAGCTCATCGATTATGACAAGCTGAGAAAGGATGACCCAGTGACCAATCTGAACAACGCTTTTGAAGTGGCAGAGCGATACCTCGACATCCCCAAGATGTTGGATGCAGAGGACATTGTGAACACAGCACGTCCGGATGAGAAAGCCATAATGACCTATGTGTCCAGTTTCTACCATGCCTTTTCTGGAGCCCAGAAGGCTGAGACAGCGGCTAATCGTATTTGCAAGGTGTTGGCGGTCAATCAAGAGAATGAGCACCTGATGGAGGACTATGAAAAACTGGCCAGCGATcttttggaGTGGATTCGTAGGACAATCCCATGGCTGGAAAACCGTGCTCCAGAGAAAACCATGGCAGAAATGCAGCAGAAGTTGGAAGATTTCCGTGATTACCGTCGCGTTCACAAACCACCCAAAGTTCAGGAGAAGTGTCAGTTAGAGATCAACTTCAATACATTGCAGACCAAACTACGACTGAGCAACCGACCAGCCTTTATGCCATCTGAGGGACGCATGGTGTCGGACATTAATGGTGCATGGCATAAACTGGAAGGGGCGGAAAAAGGCTATGAAGAGTGGCTACTGAATGAGATCCGTCGTCTGGAGAGACTTGACCATCTTGCAGAAAAGTTCCGTCAGAAGGCGGCAATCCATGAAAGCTGGACAGATGGTAAAGAGGCTATGCTAACACAGAAGGACTATGAGACCGCATCTCTGTCTGAGATCAAAGCTCTCCTGAAGAAGCATGAGGCATTCGAAAGTGACCTTGCTGCCCACCAGGACAGAGTGGAGCAGATTGCTGCCATTGCACAGGAGCTCAATGAGTTGGACTACTACGATTCCCCAAGCGTTAATGCACGCTGTCAGAAGATCTGTGAGCAATGGGATGTTCTGGGTTCCCTCACACAGAGTCGCAGAGAATCTCTGGAGAGAACCGAGAAACAGCTGGAGTCTATTGATGAGCTGTACCTGGAGTATGCCAAGAGAGCAGCACCATTCAACAACTGGATGGAGGGAGCCATGGAGGACCTTCAGGACATGTTCATTGTACACAACATTGATGAGATACAGGGACTGATAACGGCTCATGACCAGTTCAAATCAACTCTTCCAGAGGCAAATAAAGAGCGGGAAGCTATCCAGGCCATCCAGGCTGAAGTTCAGAAAATCGCACAGTACAATGGGATCAAACTGGCTGGAAACAATCCTTACACCACCATCACCCCTCAGAGCATTGACAAGAAGTGGGAGAAAGTGCAACAACTGGTTCCACAGCGTGATCAGGCTCTTCAGGAAGAACTCGCACGTCAGCAGTCTAATGACCATCTCAGACGCCAGTTTGCCAACCAGGCCAACATGATTGGACCATGGATCCAAAATAAGATGGAGGAGATTGGGCGGATATCAATTGAGATGAATGGAACGCTGGAAGATCAGCTGACCCACCTCCGTCAGTATGAGCAGAGCATCATTGAATACAAGCCCAACATTGACCAACTGGAGGGAGACCATCAGCTCATTCAGGAAGCACTTATATTTGACAACAAATACACTGCTTACACTATGGAGCACCTTCGGGTTGGTTGGGAGCAACTCCTTACTACAATTGCTCGCACCATTAATGAGATCGAGAACCAGATTCTGACTCGTGATGCTAAAGGCATCAGCCAAGAGCAGCTTCACGAGTACCGCACGTCCTTCAATCACTTCGACAAGGACCACAGTGGTGTCTTACAAGCTGAGGAGTTCAAGGCTTGTTTGATCAGTCTGGGTTACGACGTAGAAAACGACAAGCAGAAGCGCACGGGGATAATGGACAGCGACGATTTCCGCGCACTGCTCATTTCCACTGGGAACAGCCTGGGTGATGCTGAATTTGCTCGCATCATGGGTATCGTTGACCCCAACAACAGTGGAGCAGTGACCTTCCAGGCTTTCATCGACTTCATGTCAAGAGAAACAACCGACACAGACACCGCAGACCAGGTCATCGCCTCATTTAAGATCCTAGCCGGTGACAAGAACTACATCACAGCCGAGGAGTTGAGGCGTGAGCTTCCTCCTGACCAGGCAGAGTACTGCATTGCCCGAATGGCACCATACACGGGCCCCGACGCGGTGCCAGGCGCCCTTGACTACATGTCCTTCTCCACCGCCCTGTATGGGGAGAGCGACCTCTAAGGGCCAACTCCAGAACTCCGGAGCAGTTCTCTCTCCTGCATCAGTGCTGATCTTCTCACAGACTAGATAGATGAGAGCGCTGGATGAAGCTgcatctgtctttctctcaaCCATCCAGTCCTTAAAGAGATCAGTGCtcctgaggaagaggaagataTTTAAGAGTGTTGGAAATGGGACTTCATAGCACACCTGAGGGGGAGGGGGGGGTAGATGTTTTGGGGAAAGGGTTACCATGGCATTGTGGGAAGAGCAAATAACTGTTGATGAAGCTTGCCACGCATTGAGGGATAACCTTATGATTCCGTGTTAAACATGTCAGTCTTGGAGAGCTTAAGAAAAATGTAGGATAGAAGGAAAGAAAAGTTTAATATTGCAGATTCAGTGTCAAGGGAAAGAGGGGGTGTGGCTTTGGACTGTAGCTACAGCTCAGGTTCTTTAATCTTCTTCCGTTTCCTCTTAAAATGACATGCGTAGTGTGAAAGGACTCAGTGGGGTTTTTCCAGCTATCAAGTGATTTCTCACCAGCAGTAACCTCTAAAGAGAGTTGATGTTGAAAAGCCGATGGgctcattaaataaaaaaaatcttaagaatTATTAAATTTACTAGGTTGTTTTGGGATGGAACTAAAAAGAGCTTAAAGAATCAGCTTTGGCTTCAGTCTATGCCTAGACACTTAACCTGCACCCTCTACCCTGATGGGGAGGGCACAAGCTTTTCCAGTTAACAtgctatttttctttgttttaattttgttgttttcttcctAGAGTTGGTGGGGTGGGAGGATTGGTTTGGGGTTGGAATATGTTATTTGGCATATAGCAAGGCTGTATATCGTAGGAAAATGGACAGAATGACTAAAGTGTTTCGATAGGGAAATTGTGACATGCCCTCTTAACCCATTTTGCTGGATCGGTGGAACTCTTTGAAAATCTAACCTCAGCTTttcctcccttttttttttttttttttttttttttttcctctccagcAATTTTTGAGTTAGCGGGATTCTACGCTGTACATACTTATTTTCCAGTACACAGAACTGTCGGACTACCCATGGCGGTCAAACTGGGCTTCAGGTCATAAGCAAAGATTATAAAATGCGCAGTTTCACCCCCGCGGAGTACTGTAGGCAGGCTTAGGTATCTACAGGTCTGTTTCTTTTGAGGGGTTGAAGAATGAAGCTACAAAAAGCACCCAGTcgattttgttgttttccttaCCCCATCACCTACCTATACAGCAATCTCTTATTGACTCCCTGACTCAAGTAGACATGTCCCCTAAGGATTTATCAACTGAAACTAATGTCCATCTGCCATCCATCTCTAATTGTTTCTCAGATATTACTGAATGTCCACGTGAGAGCTTCAATGCTGATGAGAGCAGCATAGCCTTGTAGTGACCCTCCACTAGAGCCTATAACTACACCGCTGCTTAATCAACAGTGGAAAAGAGAATTTTATATAGTCAGAAACAAGTACAAATGTGCCTGGTAGTTGCAGGTTGCTCTCTCTcccaatcatttttttttcttttgttgtgcACTCGTTTTTTCTCTTTCTACAGGGAGGGGCAGGGACCCAACGTACAGCTCTGGAGGTTAAGGGGAAGGAGTGGGAGAGCTGAAGTCTTAATGAACATTCCATTATgtcttaattaaaattaaattactgtCTAACAAATCTATGCAATCATGTATCCAATACCAACCATGCTCTGTAATGAACGGCGGGGGTGATTTGCAATCGGAAGTGTTAAATTGAAGTGAGAACAAATTAAGGGTAGAGGGAGGGAATAGGGTTGGGAAGATGGGTTCAGAAGATTCGAACAGACTTGGACCAAAAGCCTGCTCTTACGTCTGCAAagttgaataaaagcatttggaattctgattttttttttcttttgtactcTTTAATATCAAACGTTATCTGCTGTACTGGAAATTTGCAAAAACTGCTTTCTGTCTCAAGATGATAAGTGAATttcacatgcacacataaagtTTCCTTATAAAATATTACCACTTTGAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K05699 ACTN1_4; actinin alpha 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160720 lncRNA upstream 8310 22522750 ~ 22564181 (+) True G108740
TU160749 lncRNA upstream 39264 22532872 ~ 22533227 (+) True G108762
TU160726 lncRNA upstream 61233 22508587 ~ 22511258 (+) True G108743
TU160727 lncRNA upstream 62459 22501771 ~ 22510032 (+) False G108743
TU160702 lncRNA upstream 125599 22391683 ~ 22446892 (+) True G108736
XR_006252652.1 lncRNA downstream 2923 22619676 ~ 22629112 (+) True LOC122358854
TU160772 lncRNA downstream 29966 22646719 ~ 22648345 (+) False G108777
TU160946 lncRNA downstream 44232 22660985 ~ 22666293 (+) True G108906
TU160994 lncRNA downstream 158025 22774778 ~ 22775573 (+) True G108949
TU161043 lncRNA downstream 220932 22837685 ~ 22838122 (+) True G108981
XM_043258720.1 mRNA upstream 2700 22547353 ~ 22569791 (+) True zgc:85932
XM_043258748.1 mRNA upstream 64708 22499146 ~ 22507783 (+) True dhrs12la
XM_043258721.1 mRNA upstream 78872 22489884 ~ 22493619 (+) True scg2a
XM_043258764.1 mRNA upstream 96780 22474004 ~ 22475711 (+) True kcne4
XM_043258719.1 mRNA upstream 101302 22447594 ~ 22471189 (+) True acsl3a
XM_043258730.1 mRNA downstream 97753 22714506 ~ 22731196 (+) True tyr
XM_043258729.1 mRNA downstream 104198 22720951 ~ 22731196 (+) False tyr
XM_043258717.1 mRNA downstream 134781 22751534 ~ 22764962 (+) True naalad2
XM_043258175.1 mRNA downstream 192027 22808780 ~ 22813270 (+) True lrrc51
XM_043258552.1 mRNA downstream 207310 22824063 ~ 22834787 (+) True LOC122358711
TU160427 other upstream 834804 21736680 ~ 21737687 (+) True G108573
TU160426 other upstream 836773 21735014 ~ 21735718 (+) True G108572
TU160425 other upstream 839384 21731981 ~ 21733107 (+) True G108571
TU160418 other upstream 846317 21724555 ~ 21726174 (+) False LOC122358705
unassigned_transcript_2157 other upstream 1317486 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160996 other downstream 158896 22775649 ~ 22777725 (+) True G108951
TU161070 other downstream 332387 22949140 ~ 22953513 (+) True G108990
TU161085 other downstream 338994 22955747 ~ 22959370 (+) False msantd4
TU161296 other downstream 647423 23264176 ~ 23271291 (+) True G109132
XR_006252725.1 other downstream 776002 23392755 ~ 23393038 (+) True LOC122359600

Expression Profile