RNA id: XM_043258720.1


Basic Information

Item Value
RNA id XM_043258720.1
length 2243
RNA type mRNA
GC content 0.52
exon number 21
gene id zgc:85932
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22547353 ~ 22569791 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGAGAAGGACAGAAGTGCTCCAGTATGACCGAGACAAAGAAAGCCTGGGACGGACTGTGGTCTCCCGCCTCCGGGCAGCCTCTGCAGGACGGCCTTTACACCGACGACAGGTTCCGGCACGACATGCTGCTTCAGAAAGACGTGCTTTGGAAACGACCAAAGGAGATCTGTCCGTTTCCTCAGTTCGTTGCGGACGGAGCCACTCGTATGGACGTCTGCCAAGGAGATCTGAgtgacTGCTGGTTCTTGTCTGCAGtggcgtctctctctctctatccttcTCTTCTGCATCGTGTCGTTCCCTCTGGCCAGGGCTTTCAGGAGGGCTACAGCGGCTGCTTCACTTTCCGGTTTTGGCAGTATGGTGAGTGGACTGAGGTGCGGGTCGATGACCGCTTGCCCACACAAAACGGTTCCCTGAAGTATCTGTGCTCCTCAGACAAAAATGAATTCTGGAGCGCTCTACTGGAAAAAGCTTATGCCAAGCTGAAGGGGGGTTATACTGCTCTGAACATGGGTTTTCCTCATGAGGCCATGGCAGACGTGACAGGTGGGGTTACAGAGGGCTTCATGGTGCCGGCTGACCCTCGAAAGCTGAGCTTTTTCCTTCACCCGCTGCTGCAGAAAGGAGCTCTGATCAACTGTGCTAACTCCAAGGATTCCCTTGGGAAGAAGAATGAGTATGGGATTATGTTCAGGCATGTCTACTCTGTGACCGGTTTGGAGACGatcaAGACTACGATGGGTCCGGTTCAGCTGATGCGGGTCAGGAACCCGTGGGGTAATACTGAGTGGGAGGGGCCTTGGAGTGACGAGAAAGGGAAGGAGTGGGACTTGGTGAGCGCTGAAGAGCAGCGGCGTGTTCAGAGAAGCCAGCGTAATGACGGGGAATTCTGGATGTCTCTGGCCGATTTCTGCCAGAACTTCGACACGATAGAGGTCTGTCACCTGAGCGAAGAAACGCTGAGCGAGAGCGGAGTCAAAAAGCCCTGGAAATGTACATCACATCACGGACGATGGGTTTCTTGGCAAGggccTCCTCAGTACAGCCTGACCCTGCTGGAGGAGGACGACGACCCCAGTGACCCTGAACTAACGTGCTCATTCCTGCTGGCGCTCATGCAGAAACACATTCGTCTGAAAGGAATGACGCTGCTGAAGGCCGCGCTGCACATATACAAGgcCCGATCCCAGGGTGATTTCCTCTCGTCTTGGGACATGTCTCAGCTGAGGCCGGTGCTCAGCACCACTGTAGACCCTAATAATCGTGATCAGTACGTCCAGCTGCGGGAGCTGGTGCTGCGCGGTCGCCTGGCGCCCGGTCATTACATCATCGTTCCCCAGACTTCAGAGACCAATGAGGAGAGAGAATTCCTCCTGAGAGTCCTGACTGAGAAAGGAAACAGTACCGTatATGTTGATACACCAGGAGAAGACTCCTCATTAACTCTGccgCTGTCTCCACGTCTCGCAGGTCTGCCGTCTGTAAACGAAGCCAAAGATCTCTTCGTGAAACACTGTGGCAAGGGGTCTTATTGTAGCCCTTTGGATCTGTGTAACCTGCTGAAAGAAGCCATTGCCAAAGGAGTGTTCGCGGGCAGCGAGAGGCAGCTGAGTCTGGAGCACTGCAAGAGCTTCGTGGTGCTCATGGACAGCCGAGGAATGGGACGACTCGACTCGACAGAGTTCCAGGCATTGTGGGAAAAACTGCGCAAGTGGACGatcatttttatgacatttgaCAAAAACAAGAACCAGGCCCTGGATTACGTAGAAATCCCACCCGCACTGACTGCAGCAGGCATACGGGTGGATGAGTTCATAATGCAGCTGATCGGCCTGCGCTACACCGAGCCAGATATGACGGTCAGCTTCCCGGGATTCCTCTTCCTGCTCACCAAACTGGACTGCATGATGCgcAAGTTTCAGGCATTTGATGTGACAGGAACGGGAATGATTTCAGTAAACTGCAGAcagTTCCTGTACATGACCATGTACAACTGATTCCAGAGCAGCTGCAGGAACACAGCTCTACATCTGCTTTACAGAGCGTTCCAGGAGAGGAAGCTGATTGGTCGAGACAGAGTTACATTTAAGCTACAATACTAGAAATTCTATATTAATAGatatgatgaaaaatacagttactatatatatatagcaactataaactttatttttttttactgcttgtACTACTATACTGCTTCTAGTAGACAGatgtcaattaattaatttgctc

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160749 lncRNA upstream 14126 22532872 ~ 22533227 (+) True G108762
TU160726 lncRNA upstream 36095 22508587 ~ 22511258 (+) True G108743
TU160727 lncRNA upstream 37321 22501771 ~ 22510032 (+) False G108743
TU160702 lncRNA upstream 100461 22391683 ~ 22446892 (+) True G108736
TU160685 lncRNA upstream 191440 22340732 ~ 22355913 (+) True G108723
TU160775 lncRNA downstream 18144 22587935 ~ 22648345 (+) True G108777
XR_006252652.1 lncRNA downstream 49885 22619676 ~ 22629112 (+) True LOC122358854
TU160772 lncRNA downstream 76928 22646719 ~ 22648345 (+) False G108777
TU160946 lncRNA downstream 91194 22660985 ~ 22666293 (+) True G108906
TU160994 lncRNA downstream 204987 22774778 ~ 22775573 (+) True G108949
XM_043258748.1 mRNA upstream 39570 22499146 ~ 22507783 (+) True dhrs12la
XM_043258721.1 mRNA upstream 53734 22489884 ~ 22493619 (+) True scg2a
XM_043258764.1 mRNA upstream 71642 22474004 ~ 22475711 (+) True kcne4
XM_043258719.1 mRNA upstream 76164 22447594 ~ 22471189 (+) True acsl3a
XM_043258718.1 mRNA upstream 76164 22447594 ~ 22471189 (+) False acsl3a
XM_043258709.1 mRNA downstream 2700 22572491 ~ 22616753 (+) True actn4
XM_043258707.1 mRNA downstream 2700 22572491 ~ 22616753 (+) False actn4
XM_043258708.1 mRNA downstream 2700 22572491 ~ 22616753 (+) False actn4
XM_043258705.1 mRNA downstream 2701 22572492 ~ 22616753 (+) False actn4
XM_043258706.1 mRNA downstream 2701 22572492 ~ 22616753 (+) False actn4
TU160427 other upstream 809666 21736680 ~ 21737687 (+) True G108573
TU160426 other upstream 811635 21735014 ~ 21735718 (+) True G108572
TU160425 other upstream 814246 21731981 ~ 21733107 (+) True G108571
TU160418 other upstream 821179 21724555 ~ 21726174 (+) False LOC122358705
unassigned_transcript_2157 other upstream 1292348 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160996 other downstream 205858 22775649 ~ 22777725 (+) True G108951
TU161070 other downstream 379349 22949140 ~ 22953513 (+) True G108990
TU161085 other downstream 385956 22955747 ~ 22959370 (+) False msantd4
TU161296 other downstream 694385 23264176 ~ 23271291 (+) True G109132
XR_006252725.1 other downstream 822964 23392755 ~ 23393038 (+) True LOC122359600

Expression Profile