RNA id: XM_043258726.1


Basic Information

Item Value
RNA id XM_043258726.1
length 1965
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC122358818
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 21791606 ~ 21833216 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGCATCGTACCTTACCTGAAACCTTTCAGCGACTCTCATTGGTTCTTCTGTTTAATTTGGATGCATTTTTAACCACCTCGCTGAATTTTCCAATTGTCTAAGTGTGAGAGAAATCAGCAAGAACAGAAAGACCGGAGGAGTTTTACTACAATGAATCGAATATTGATCCCGATGCTGCTCGCTCTCGGGCTGTCCGGCGTGCGCGCGCACAGAGTGAATAAGCACAAGCCGTGGATCGAGAGCTCATACCACGGCGTCATCACAGAAAACACGGACGTGGTTCTGCTGGATCCTCCTTTAGTGGCTCTGGACAAAGACGCTCCGGTTCCGTATGCTGGTGAAATCTGTGGCTTTCACGTGCAGGGTCTCAGCGCTCCGTTCGAGGCCGTGGTTCTGAACCGTACGTCAGGGGAGGGCCGTCTGCGAGCGCGTGGACTGATCGActgcgagagacagagagagttcACCTTCATCATTCAGGCTCACGACTGCGGCACGGGGCCGGAGGGACACGCGGAGAAGAGATCACACaaGGCCGTGGTGCGTGTGCAGGTGGGAGACGTGAACGAGTTTTCTCCGGTGTTCGCTCAGTTGGAGTATCACGGCTCGGTGACGGAGGGCAAGGTGTATGACAGCATTGTGCAGGTGCAGGCGTCGGACCAGGACTGCTCTCCTCAATACAGCCAGATCTGCAACTACCAGATCACCTCTCAGGACGCAGCCTTCGCCATAGACCGCAACGGTAACATCAGGAACACGGAGAGCCTGAGCTTTGATAAGATGTCGCATTACAAAATCCGCGTGACGGCGCTCGACTGCGGTCAGAAGAGAGCGGCGCGGGACGCCGTCGTGCACATCCACGTCAAGCCTGTATGCAAGCCCGGATGGCAGGgCTGGAGCAAGCTGGTTGACTACGAACCGGGGACGGGCAGTAAGCTGTTATTTCCCAAGATGCACCTGGAGACGTGTGCGGGGTCGGTGTCGTGGATCAGGACCACGGTGGAGCTGGAGACCAGCGGTGCCGGGAGAGGCTGTGACAGACAGTCTTACTCTGAGCGCTCCTTACAGAAGCTCTGCGGAGCCTCATCAGGCAGCACAGATCTTCTGCCGGCCCCCAGCGGTGTTTTTAATTGGACGGCGACTCTTGTGACGGACGGCGGCCTGGACAGTGACCTCACATACCGCTTTGATGGTCGTCAAGCTGCCAAGATCCCAGACTGGGTCGTACTGCAGAATCTAACCCATCAGTTTACCATAACCACGTGGATGAAGCACGGGCCGAGTCCAGGACAGAGAGCCGAGAAAGAAACACTGCTCTGCAACTCTGACAAAACAGAGATGAACCGACACCATTACTCTCTGTACGTGCATAACTGCAGGCTGGTTTTCCTGCTGAGGACGGactacacacagacagactccTTCAGACCGGCCGAATTCCACTGGAAATTAGAGCAGatCTGTGATAAGGAGTGGCATTATTACGTCATCAGCGTTGATTTCCCAGTGGTGTCTCTGTATGTGGACGGCGTGACCTATGACCCGTATCTGGTGACGGACGACTGGCCCATCCACTCGTCTCAGATCGACGTGCAGCTCACCGTAGGAGCCTGCTGGCAAGgtgGTGAGGTCTCTAAAGCAAAGTTTACGCAGTATTTCAGAGGCAGTTTGTCTGGACTCACGGTACGAGCAGGAAAGATGGAAAGCCAGAAGATCATCTCCTGCCTACAGGCCTGCAAAGAAGGACTGGACATCACCTCACTGGAAAACCTCGGACAGAGGATAAAGGTTACACGCACATATCCGCCTAACTTTATAAAAACGCTGTACAAAATCTAAATCACAAATCCGAATGAACGAGCTACAGCCTCTTCAAGGTCACAGTTTTGATTGCACGTTCTGGAAAACGTTACACTGCAAGTCGCATTGCATTAGTCCTGAAAAGGAGTTCGCCCGTGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160422 lncRNA upstream 64036 21727060 ~ 21727570 (+) True G108569
TU160400 lncRNA upstream 174413 21616656 ~ 21617193 (+) True G108553
TU160232 lncRNA upstream 589097 21201387 ~ 21202509 (+) True G108427
TU160223 lncRNA upstream 601233 21072081 ~ 21190373 (+) True G108418
TU160192 lncRNA upstream 941691 20848722 ~ 20849915 (+) True G108394
TU160575 lncRNA downstream 192582 22025798 ~ 22026309 (+) True G108648
TU160590 lncRNA downstream 195221 22028437 ~ 22036838 (+) True G108654
TU160588 lncRNA downstream 197408 22030624 ~ 22036838 (+) False G108654
TU160589 lncRNA downstream 197408 22030624 ~ 22036838 (+) False G108654
TU160659 lncRNA downstream 344176 22177392 ~ 22178630 (+) True G108713
XM_043258549.1 mRNA upstream 65340 21724404 ~ 21726266 (+) True LOC122358705
XM_043258913.1 mRNA upstream 67626 21715201 ~ 21723980 (+) True LOC122358927
XM_043258140.1 mRNA upstream 208699 21567245 ~ 21582907 (+) True mtnr1ba
XM_043259418.1 mRNA upstream 237066 21420083 ~ 21554540 (+) True fat3a
XM_043258551.1 mRNA downstream 9447 21842663 ~ 22014307 (+) True clstn2b
XM_043258731.1 mRNA downstream 218374 22051590 ~ 22065590 (+) False pxylp1
XM_043258732.1 mRNA downstream 222364 22055580 ~ 22065594 (+) True pxylp1
XM_043258742.1 mRNA downstream 333898 22167114 ~ 22174542 (+) True sgpp2
XM_043258716.1 mRNA downstream 350332 22183548 ~ 22205101 (+) True scaf4b
TU160427 other upstream 53919 21736680 ~ 21737687 (+) True G108573
TU160426 other upstream 55888 21735014 ~ 21735718 (+) True G108572
TU160425 other upstream 58499 21731981 ~ 21733107 (+) True G108571
TU160418 other upstream 65432 21724555 ~ 21726174 (+) False LOC122358705
unassigned_transcript_2157 other upstream 536601 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160996 other downstream 942433 22775649 ~ 22777725 (+) True G108951
TU161070 other downstream 1115924 22949140 ~ 22953513 (+) True G108990
TU161085 other downstream 1122531 22955747 ~ 22959370 (+) False msantd4
TU161296 other downstream 1430960 23264176 ~ 23271291 (+) True G109132
XR_006252725.1 other downstream 1559539 23392755 ~ 23393038 (+) True LOC122359600

Expression Profile